C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126563 Snx14-004 ENSMUSG00000032422 10090 - 9:88419698-88438912 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryENSMUST00000126563
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000126563 53.641±11.69 12.545±3.86 17.138±5.47 6.527±0.00 6.908±1.77 18.762±2.90 17.431±3.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_0008Z9 CIL_0008Z9_0002 VISTA 9:87836921-88439766
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255
CIL_0006BN CIL_0006BN_0003 CGP 9:88327197-88438958
CIL_0005XI CIL_0005XI_0002 CGP 9:88376750-88456616

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314673 SNX14-002 protein_coding Homo_sapiens 0 542
ENST00000346348 SNX14-001 protein_coding Homo_sapiens 0 542
ENST00000369627 SNX14-008 protein_coding Homo_sapiens 0 542
ENST00000369635 SNX14-005 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000503906 RP11-321N4.5-001 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000505648 SNX14-009 protein_coding Homo_sapiens 0 390
ENST00000508980 SNX14-006 processed_transcript Homo_sapiens 0 394
ENST00000509338 SNX14-013 protein_coding Homo_sapiens 0 390
ENST00000513865 SNX14-007 protein_coding Homo_sapiens 0 542
ENST00000513869 SNX14-014 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000514419 SNX14-015 protein_coding Homo_sapiens 0 527
ENST00000515216 SNX14-011 protein_coding Homo_sapiens 0 220

Loading