C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005XI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135317-ENSG00000271793 CGP 9606 6:85505496-85615234
GeneTranscriptPositionBiotype
ENSG00000135316 (SYNCRIP)
synaptotagmin binding, cytoplasmic RNA interacting protein 		ENST00000355238 (SYNCRIP-002) 85608329-85642991 protein_coding
ENST00000369622 (SYNCRIP-001) 85614106-85643285 protein_coding
ENST00000444272 (SYNCRIP-003) 85637078-85643792 protein_coding
ENST00000616122 (SYNCRIP-201) 85607785-85642922 protein_coding
ENSG00000135317 (SNX14)
sorting nexin 14 		ENST00000314673 (SNX14-002) 85505499-85593895 protein_coding
ENST00000346348 (SNX14-001) 85505496-85593913 protein_coding
ENST00000369627 (SNX14-008) 85505802-85593850 protein_coding
ENST00000369635 (SNX14-005) 85513857-85593785 nonsense_mediated_decay
ENST00000418862 (SNX14-004) 85508007-85528351 protein_coding
ENST00000474645 (SNX14-003) 85505798-85508457 retained_intron
ENST00000503491 (SNX14-012) 85505806-85568483 retained_intron
ENST00000503608 (SNX14-019) 85517569-85533680 retained_intron
ENST00000504191 (SNX14-016) 85547402-85549758 retained_intron
ENST00000505648 (SNX14-009) 85505798-85594156 protein_coding
ENST00000506182 (SNX14-017) 85528264-85543787 retained_intron
ENST00000508658 (SNX14-020) 85507208-85514613 protein_coding
ENST00000508980 (SNX14-006) 85505799-85581846 processed_transcript
ENST00000509338 (SNX14-013) 85549789-85593885 protein_coding
ENST00000513865 (SNX14-007) 85505793-85593805 protein_coding
ENST00000513869 (SNX14-014) 85549824-85593857 nonsense_mediated_decay
ENST00000514419 (SNX14-015) 85549801-85593871 protein_coding
ENST00000514801 (SNX14-018) 85533675-85537024 retained_intron
ENST00000515216 (SNX14-011) 85507968-85589693 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0005XI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032422-ENSMUSG00000092541 CGP 10090 9:88376750-88456616
GeneTranscriptPositionBiotype
ENSMUSG00000032422 (Snx14)
sorting nexin 14 		ENSMUST00000126405 (Snx14-003) 88381539-88438929 nonsense_mediated_decay
ENSMUST00000126563 (Snx14-004) 88419698-88438912 retained_intron
ENSMUST00000140439 (Snx14-002) 88376752-88398621 retained_intron
ENSMUST00000165315 (Snx14-001) 88376750-88438951 protein_coding
ENSMUST00000173011 (Snx14-007) 88376752-88438898 protein_coding
ENSMUST00000173039 (Snx14-005) 88376764-88438958 protein_coding
ENSMUST00000174806 (Snx14-006) 88376767-88438914 protein_coding
ENSMUST00000187610 (Snx14-008) 88392206-88394474 retained_intron
ENSMUSG00000032423 (Syncrip)
synaptotagmin binding, cytoplasmic RNA interacting protein 		ENSMUST00000069221 (Syncrip-001) 88449739-88482559 protein_coding
ENSMUST00000172508 (Syncrip-009) 88479662-88482574 protein_coding
ENSMUST00000172828 (Syncrip-005) 88453938-88482149 nonsense_mediated_decay
ENSMUST00000173405 (Syncrip-010) 88476866-88481169 protein_coding
ENSMUST00000173801 (Syncrip-002) 88455578-88482555 protein_coding
ENSMUST00000174145 (Syncrip-011) 88464601-88480744 retained_intron
ENSMUST00000174269 (Syncrip-006) 88452640-88482131 protein_coding
ENSMUST00000174282 (Syncrip-003) 88452689-88482196 protein_coding
ENSMUST00000174361 (Syncrip-008) 88456138-88480753 protein_coding
ENSMUST00000174391 (Syncrip-004) 88449731-88482248 protein_coding
ENSMUST00000174688 (Syncrip-007) 88452437-88480765 protein_coding
ENSMUST00000187770 (Syncrip-012) 88478723-88481224 retained_intron
ENSMUSG00000101335 (RP24-286H7.4)
predicted gene 28229 		ENSMUST00000188747 (RP24-286H7.4-001) 88441500-88443652 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XI_0001ENSG00000135316ENST00000355238ENST00000369622ENST00000444272ENST00000616122ENSG00000135317ENST00000314673ENST00000346348ENST00000369627ENST00000369635ENST00000418862ENST00000474645ENST00000503491ENST00000503608ENST00000504191ENST00000505648ENST00000506182ENST00000508658ENST00000508980ENST00000509338ENST00000513865ENST00000513869ENST00000514419ENST00000514801ENST00000515216CIL_0005XI_0002ENSMUSG00000032422ENSMUST00000126405ENSMUST00000126563ENSMUST00000140439ENSMUST00000165315ENSMUST00000173011ENSMUST00000173039ENSMUST00000174806ENSMUST00000187610ENSMUSG00000032423ENSMUST00000069221ENSMUST00000172508ENSMUST00000172828ENSMUST00000173405ENSMUST00000173801ENSMUST00000174145ENSMUST00000174269ENSMUST00000174282ENSMUST00000174361ENSMUST00000174391ENSMUST00000174688ENSMUST00000187770ENSMUSG00000101335ENSMUST00000188747
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XI_0001ENSG00000135316ENST00000355238ENST00000369622ENST00000616122ENSG00000135317ENST00000314673ENST00000369627ENST00000369635ENST00000505648CIL_0005XI_0002ENSMUSG00000032422ENSMUST00000126405ENSMUST00000126563ENSMUST00000165315ENSMUST00000173011ENSMUST00000173039ENSMUST00000174806ENSMUSG00000032423ENSMUST00000069221ENSMUST00000172828ENSMUST00000173801ENSMUST00000174282ENSMUST00000174391ENSMUST00000174688ENSMUSG00000101335ENSMUST00000188747
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135316 ENST00000355238 11.629±0.00 10.549±0.00 3.416±0.00 4.976±3.09 7.291±2.40 7.961±2.96 4.475±2.81 8.613±4.64 7.808±2.67 6.955±0.11 5.246±4.57 9.499±1.44 10.564±1.20 10.976±0.64
ENST00000369622 12.370±0.00 16.509±0.00 N/A 11.467±0.00 12.997±0.00 7.195±0.00 7.112±0.00 17.508±0.00 12.047±0.00 6.857±0.00 8.545±0.00 14.350±0.00 18.427±8.26 17.895±3.86
ENST00000444272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616122 3.132±0.00 3.844±0.00 N/A 2.693±0.00 3.383±0.00 N/A 0.855±0.00 2.489±0.00 4.791±0.00 2.168±0.00 1.857±0.00 5.843±1.17 N/A N/A
ENSG00000135317 ENST00000314673 N/A N/A N/A 6.029±0.62 N/A N/A 1.388±0.00 N/A N/A N/A N/A 9.773±0.00 N/A N/A
ENST00000346348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369627 N/A N/A 3.293±0.00 N/A N/A N/A N/A 5.719±0.00 N/A N/A N/A 6.378±0.00 N/A 12.008±0.00
ENST00000369635 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.239±0.00 N/A N/A N/A N/A
ENST00000418862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505648 N/A N/A N/A 5.743±0.00 N/A N/A 1.788±0.00 N/A N/A N/A 1.002±0.00 N/A N/A 15.811±0.00
ENST00000506182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032422 ENSMUST00000126405 2.071±0.00 9.186±1.59 N/A N/A 2.211±0.00 3.367±0.00 3.202±0.40 N/A 1.823±0.09 6.354±0.00 N/A N/A N/A N/A
ENSMUST00000126563 N/A 53.641±11.69 N/A N/A 12.545±3.86 17.138±5.47 N/A 6.527±0.00 6.908±1.77 18.762±2.90 N/A 17.431±3.62 N/A N/A
ENSMUST00000140439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165315 4.312±1.51 N/A 16.537±0.86 N/A 3.167±0.36 5.175±0.00 3.791±0.90 4.667±1.35 6.151±2.30 7.453±1.94 N/A 9.893±5.25 12.758±2.25 8.320±1.45
ENSMUST00000173011 N/A N/A N/A N/A 3.487±0.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173039 N/A 8.337±2.50 N/A N/A 3.380±0.06 6.706±2.24 N/A 5.776±1.30 3.440±1.42 3.839±0.38 N/A 3.115±0.72 N/A 3.113±0.00
ENSMUST00000174806 N/A N/A N/A 9.361±0.00 N/A N/A 2.955±0.00 N/A N/A N/A 3.656±0.54 N/A N/A N/A
ENSMUST00000187610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032423 ENSMUST00000069221 2.546±1.00 N/A 7.673±1.18 7.942±1.37 1.756±0.84 N/A 1.533±0.29 2.436±0.10 2.928±1.49 3.478±0.78 3.490±1.57 1.906±0.00 4.218±0.34 N/A
ENSMUST00000172508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172828 N/A N/A N/A 31.428±0.00 N/A N/A N/A N/A N/A N/A 5.518±0.80 36.811±24.67 49.299±33.35 68.909±0.00
ENSMUST00000173405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173801 N/A 6.057±0.00 N/A 11.475±0.00 4.197±0.00 4.709±0.00 2.501±0.15 5.100±0.00 4.923±3.37 N/A N/A 2.916±1.11 10.651±0.22 5.147±1.46
ENSMUST00000174145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174282 N/A N/A N/A 9.522±0.00 N/A N/A 2.131±0.00 N/A 5.801±2.69 N/A 3.301±0.61 10.683±1.49 10.784±3.48 N/A
ENSMUST00000174361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174391 N/A N/A N/A 5.231±0.45 N/A N/A N/A N/A N/A N/A 3.146±1.61 5.520±2.48 2.836±0.00 N/A
ENSMUST00000174688 N/A N/A N/A N/A N/A N/A N/A N/A 4.937±0.63 N/A N/A N/A N/A N/A
ENSMUST00000187770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101335 ENSMUST00000188747 0.410±0.19 0.519±0.28 1.316±0.31 0.952±0.77 0.514±0.14 0.461±0.11 0.173±0.01 0.286±0.12 0.907±0.55 0.335±0.11 0.830±0.17 0.497±0.36 0.491±0.32 0.426±0.18

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