C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Src homology 2 domain containing F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121237 Shf-008 ENSMUSG00000033256 10090 - 2:122349199-122358240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121237
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121237 1.273±0.00 0.995±0.07 2.363±0.91 3.101±0.24 0.497±0.02 2.227±0.77 1.496±0.49 0.646±0.09 0.285±0.11 2.867±1.06 1.258±0.23 3.067±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DG CIL_0004DG_0002 CGP 2:122315672-122369162
CIL_0004NE CIL_0004NE_0002 CGP 2:122348892-122461137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290894 SHF-001 protein_coding Homo_sapiens 0 789
ENST00000458022 SHF-008 protein_coding Homo_sapiens 0 1038
ENST00000558294 SHF-012 protein_coding Homo_sapiens 0 525
ENST00000558685 SHF-011 protein_coding Homo_sapiens 0 254
ENST00000559566 SHF-009 protein_coding Homo_sapiens 0 682
ENST00000560471 SHF-006 protein_coding Homo_sapiens 0 442
ENST00000560540 SHF-002 protein_coding Homo_sapiens 0 1048
ENST00000560734 SHF-004 protein_coding Homo_sapiens 0 357
ENST00000561091 SHF-014 processed_transcript Homo_sapiens 0 255
ENST00000561239 SHF-013 protein_coding Homo_sapiens 0 355

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