C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Src homology 2 domain containing F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110531 Shf-201 ENSMUSG00000033256 10090 - 2:122348893-122368918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110531 0.742±0.13 0.966±0.31 1.500±0.12 4.917±1.22 0.569±0.00 1.333±0.18 0.309±0.09 1.081±0.38 1.709±0.47 0.353±0.04 0.320±0.13 1.098±0.00 2.428±0.61 2.533±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DG CIL_0004DG_0002 CGP 2:122315672-122369162
CIL_0004NE CIL_0004NE_0002 CGP 2:122348892-122461137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006915 IEA apoptotic process
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089408 shdb-001 protein_coding Danio_rerio 0.00000001 66
ENST00000290894 SHF-001 protein_coding Homo_sapiens 0 830
ENST00000458022 SHF-008 protein_coding Homo_sapiens 0 1262
ENST00000558294 SHF-012 protein_coding Homo_sapiens 0 521
ENST00000558685 SHF-011 protein_coding Homo_sapiens 0 255
ENST00000559566 SHF-009 protein_coding Homo_sapiens 0 815
ENST00000560471 SHF-006 protein_coding Homo_sapiens 0 719
ENST00000560540 SHF-002 protein_coding Homo_sapiens 0 1531
ENST00000560734 SHF-004 protein_coding Homo_sapiens 0 719
ENST00000561091 SHF-014 processed_transcript Homo_sapiens 0 438
ENST00000561239 SHF-013 protein_coding Homo_sapiens 0 368

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