C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 18 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037280 Vps18-001 ENSMUSG00000034216 10090 + 2:119288742-119298453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037280
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037280 6.801±2.93 12.991±0.35 4.492±1.73 9.379±0.24 10.587±3.60 11.143±1.02 2.892±1.71 9.426±3.03 3.860±1.49 8.285±3.26 2.078±0.44 12.558±3.83 3.907±1.71 3.302±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000796 CIL_000796_0002 CGP 2:119269201-119298453
CIL_000799 CIL_000799_0002 CGP 2:119288740-119335962

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005769 IDA early endosome
GO:0005884 IDA actin filament
GO:0006886 IEA intracellular protein transport
GO:0007032 IDA endosome organization
GO:0007040 IEA lysosome organization
GO:0016192 IEA vesicle-mediated transport
GO:0030897 IEA HOPS complex
GO:0046718 IMP viral entry into host cell
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220509 VPS18-001 protein_coding Homo_sapiens 0 3437
ENST00000558474 VPS18-004 protein_coding Homo_sapiens 0 412
ENST00000558855 VPS18-003 nonsense_mediated_decay Homo_sapiens 0 296

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