C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glypican 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034220 Gpc1 10090 + 1:92831645-92860779 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045970 Gpc1-001 92831645-92860779 protein_coding
  ENSMUST00000190215 Gpc1-005 92856768-92857595 retained_intron
  ENSMUST00000190586 Gpc1-003 92853198-92855968 retained_intron
  ENSMUST00000190677 Gpc1-004 92856562-92857522 retained_intron
  ENSMUST00000191373 Gpc1-002 92831969-92835677 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045970ENSMUST00000190586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045970 14.713±9.07 18.960±1.25 2.579±0.99 37.176±15.55 7.203±3.18 6.561±1.87 78.204±31.64 3.186±1.27 0.900±0.49 7.825±2.91 45.267±21.62 32.537±14.17 25.080±9.04 3.062±0.43
ENSMUST00000190586 N/A N/A N/A N/A N/A N/A N/A N/A 0.523±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TM CIL_0007TM_0002 VISTA 1:92418794-93021273
CIL_0009AE CIL_0009AE_0002 VISTA 1:92485614-93089442
CIL_0003NP CIL_0003NP_0002 CGP 1:92644218-92860779
CIL_0004UD CIL_0004UD_0003 CGP 1:92831645-92902906

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005507 ISS copper ion binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005768 IEA endosome
GO:0005796 TAS Golgi lumen
GO:0005886 IEA plasma membrane
GO:0014037 ISS Schwann cell differentiation
GO:0017134 IDA fibroblast growth factor binding
GO:0030200 ISS heparan sulfate proteoglycan catabolic process
GO:0031225 IEA anchored component of membrane
GO:0032288 ISS myelin assembly
GO:0040037 IDA negative regulation of fibroblast growth factor receptor signaling pathway
GO:0043236 IDA laminin binding
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0045121 IDA membrane raft
GO:0070062 IEA extracellular vesicular exosome
GO:2001016 IEP positive regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019341 gpc1a glypican 1a protein_coding Danio_rerio
ENSDARG00000090456 GPC1 (2 of 3) glypican 1 protein_coding Danio_rerio
ENSDARG00000090585 gpc1b glypican 1b protein_coding Danio_rerio
ENSG00000063660 GPC1 glypican 1 protein_coding Homo_sapiens

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