C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034432 Cops8 10090 + 1:90602981-90613341 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036153 Cops8-001 90602981-90613341 protein_coding
  ENSMUST00000186152 Cops8-009 90603499-90611037 processed_transcript
  ENSMUST00000186750 Cops8-008 90603528-90612180 protein_coding
  ENSMUST00000186882 Cops8-007 90611580-90612622 protein_coding
  ENSMUST00000189107 Cops8-006 90611346-90612393 retained_intron
  ENSMUST00000189309 Cops8-004 90603478-90611466 retained_intron
  ENSMUST00000190057 Cops8-003 90603499-90605658 retained_intron
  ENSMUST00000190700 Cops8-005 90609654-90611328 retained_intron
  ENSMUST00000191510 Cops8-002 90603476-90613124 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036153ENSMUST00000186750ENSMUST00000186882ENSMUST00000189309ENSMUST00000191510
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036153 25.333±4.61 N/A 31.834±3.55 29.731±12.28 17.384±8.40 N/A 27.383±2.98 15.615±5.20 14.459±8.46 12.415±2.05 33.805±1.10 11.681±9.51 15.914±6.98 20.641±9.25
ENSMUST00000186750 N/A N/A N/A 49.567±0.00 N/A N/A N/A N/A N/A N/A N/A 33.237±0.00 31.117±5.66 17.667±0.00
ENSMUST00000186882 N/A N/A N/A 45.017±0.00 28.785±0.00 N/A N/A N/A N/A N/A N/A 39.618±1.64 39.080±8.56 10.750±0.00
ENSMUST00000189309 8.275±0.00 6.492±0.72 N/A N/A 9.779±2.36 6.413±0.51 N/A N/A 3.492±0.62 10.497±1.36 N/A 12.551±2.82 7.455±1.00 2.645±0.00
ENSMUST00000191510 6.850±2.99 19.765±1.28 N/A N/A 14.360±6.71 9.328±3.55 N/A 17.300±0.00 8.209±3.03 15.754±5.06 N/A 19.734±4.88 N/A 0.879±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XT CIL_0000XT_0002 CGP 1:90203980-90613341
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0000XQ CIL_0000XQ_0002 CGP 1:90602981-90843971

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0007250 IEA activation of NF-kappaB-inducing kinase activity
GO:0008180 IDA COP9 signalosome
GO:0008285 IEA negative regulation of cell proliferation
GO:0010388 IEA cullin deneddylation
GO:0048471 IEA perinuclear region of cytoplasm
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024846 cops8 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) protein_coding Danio_rerio
ENSG00000198612 COPS8 COP9 signalosome subunit 8 protein_coding Homo_sapiens

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