C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000191510 Cops8-002 ENSMUSG00000034432 10090 + 1:90603476-90613124 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryTestisENSMUST00000191510
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000191510 6.850±2.99 19.765±1.28 14.360±6.71 9.328±3.55 17.300±0.00 8.209±3.03 15.754±5.06 19.734±4.88 0.879±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XT CIL_0000XT_0002 CGP 1:90203980-90613341
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0000XQ CIL_0000XQ_0002 CGP 1:90602981-90843971

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354371 COPS8-001 protein_coding Homo_sapiens 0 662
ENST00000392008 COPS8-002 protein_coding Homo_sapiens 0 662
ENST00000409334 COPS8-008 protein_coding Homo_sapiens 0 259
ENST00000419015 COPS8-005 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000470452 COPS8-003 retained_intron Homo_sapiens 0 259
ENST00000473228 COPS8P2-001 processed_pseudogene Homo_sapiens 0 562

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