C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036153 Cops8-001 ENSMUSG00000034432 10090 + 1:90602981-90613341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036153
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036153 25.333±4.61 31.834±3.55 29.731±12.28 17.384±8.40 27.383±2.98 15.615±5.20 14.459±8.46 12.415±2.05 33.805±1.10 11.681±9.51 15.914±6.98 20.641±9.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XT CIL_0000XT_0002 CGP 1:90203980-90613341
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0000XQ CIL_0000XQ_0002 CGP 1:90602981-90843971

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0007250 IEA activation of NF-kappaB-inducing kinase activity
GO:0008180 IDA COP9 signalosome
GO:0008285 IEA negative regulation of cell proliferation
GO:0010388 IEA cullin deneddylation
GO:0048471 IEA perinuclear region of cytoplasm
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354371 COPS8-001 protein_coding Homo_sapiens 0 898
ENST00000392008 COPS8-002 protein_coding Homo_sapiens 0 749
ENST00000409334 COPS8-008 protein_coding Homo_sapiens 0 496
ENST00000419015 COPS8-005 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000470452 COPS8-003 retained_intron Homo_sapiens 0 496
ENST00000473228 COPS8P2-001 processed_pseudogene Homo_sapiens 0 732

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