C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189309 Cops8-004 ENSMUSG00000034432 10090 + 1:90603478-90611466 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungOvaryPlacentaTestisENSMUST00000189309
Transcript ID Adipose Adrenal Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000189309 8.275±0.00 6.492±0.72 9.779±2.36 6.413±0.51 3.492±0.62 10.497±1.36 12.551±2.82 7.455±1.00 2.645±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XT CIL_0000XT_0002 CGP 1:90203980-90613341
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0000XQ CIL_0000XQ_0002 CGP 1:90602981-90843971

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354371 COPS8-001 protein_coding Homo_sapiens 0 721
ENST00000392008 COPS8-002 protein_coding Homo_sapiens 0 584
ENST00000409334 COPS8-008 protein_coding Homo_sapiens 0 483
ENST00000419015 COPS8-005 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000470452 COPS8-003 retained_intron Homo_sapiens 0 483
ENST00000473228 COPS8P2-001 processed_pseudogene Homo_sapiens 0 623

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