C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HMG box domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034518 Hmgxb4 10090 + 8:74993356-75031978 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041759 Hmgxb4-002 74993356-75031972 protein_coding
  ENSMUST00000109940 Hmgxb4-003 75016222-75031913 protein_coding
  ENSMUST00000129391 Hmgxb4-007 75022855-75024076 retained_intron
  ENSMUST00000133585 Hmgxb4-006 74993712-75000784 retained_intron
  ENSMUST00000134126 Hmgxb4-004 74993691-74999220 processed_transcript
  ENSMUST00000145919 Hmgxb4-001 74993679-75031978 nonsense_mediated_decay
  ENSMUST00000151062 Hmgxb4-005 74993679-74999798 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041759ENSMUST00000109940ENSMUST00000145919
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041759 N/A N/A 0.970±0.36 2.364±1.07 0.684±0.00 0.414±0.00 N/A 0.421±0.00 1.143±0.55 0.993±0.00 0.302±0.04 1.326±0.00 1.082±0.51 0.567±0.26
ENSMUST00000109940 2.550±0.61 5.083±1.21 1.285±0.13 2.168±0.83 3.126±1.34 3.647±0.52 1.215±0.48 2.252±0.65 1.070±0.43 4.185±1.39 0.280±0.00 8.255±2.24 2.232±1.45 0.705±0.19
ENSMUST00000145919 2.624±1.05 1.823±0.50 3.889±0.33 4.983±2.82 1.839±0.45 1.750±0.28 0.934±0.12 1.464±0.30 2.482±1.76 2.528±0.55 1.129±0.27 4.452±1.57 3.753±1.16 0.664±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NP CIL_0002NP_0002 CGP 8:74873173-75031978
CIL_0002NE CIL_0002NE_0002 CGP 8:74993356-75070121

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016589 IEA NURF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075783 hmgxb4a HMG box domain containing 4a protein_coding Danio_rerio
ENSDARG00000091401 hmgxb4b HMG box domain containing 4b protein_coding Danio_rerio
ENSG00000100281 HMGXB4 HMG box domain containing 4 protein_coding Homo_sapiens

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