C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002NP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175329-ENSG00000100281 CGP 9606 22:35066136-35295807
GeneTranscriptPositionBiotype
ENSG00000100281 (HMGXB4)
HMG box domain containing 4 		ENST00000216106 (HMGXB4-002) 35257498-35295764 protein_coding
ENST00000418170 (HMGXB4-001) 35257487-35295807 nonsense_mediated_decay
ENST00000420166 (HMGXB4-004) 35257452-35265570 protein_coding
ENST00000455359 (HMGXB4-003) 35257496-35265567 protein_coding
ENST00000464480 (HMGXB4-007) 35262763-35264663 retained_intron
ENST00000466438 (HMGXB4-005) 35257489-35258588 processed_transcript
ENST00000498212 (HMGXB4-008) 35286882-35293028 retained_intron
ENST00000498325 (HMGXB4-006) 35261854-35264052 retained_intron
ENSG00000175329 (ISX)
intestine-specific homeobox 		ENST00000308700 (ISX-001) 35066136-35087387 protein_coding
ENST00000404699 (ISX-002) 35066136-35087386 protein_coding
ENSG00000273068 (CTA-714B7.7)
 ENST00000610215 (CTA-714B7.7-001) 35122661-35127419 lincRNA
ENSG00000279184 (RP3-323A16.1)
 ENST00000623959 (RP3-323A16.1-001) 35160947-35215025 antisense
CIL_0002NP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031621-ENSMUSG00000034518 CGP 10090 8:74873173-75031978
GeneTranscriptPositionBiotype
ENSMUSG00000031621 (Isx)
intestine specific homeobox 		ENSMUST00000034034 (Isx-001) 74873173-74893506 protein_coding
ENSMUST00000174427 (Isx-002) 74873540-74893147 protein_coding
ENSMUSG00000034518 (Hmgxb4)
HMG box domain containing 4 		ENSMUST00000041759 (Hmgxb4-002) 74993356-75031972 protein_coding
ENSMUST00000109940 (Hmgxb4-003) 75016222-75031913 protein_coding
ENSMUST00000129391 (Hmgxb4-007) 75022855-75024076 retained_intron
ENSMUST00000133585 (Hmgxb4-006) 74993712-75000784 retained_intron
ENSMUST00000134126 (Hmgxb4-004) 74993691-74999220 processed_transcript
ENSMUST00000145919 (Hmgxb4-001) 74993679-75031978 nonsense_mediated_decay
ENSMUST00000151062 (Hmgxb4-005) 74993679-74999798 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002NP_0001ENSG00000100281ENST00000216106ENST00000418170ENST00000420166ENST00000455359ENST00000464480ENST00000466438ENST00000498212ENST00000498325ENSG00000175329ENST00000308700ENST00000404699ENSG00000273068ENST00000610215ENSG00000279184ENST00000623959CIL_0002NP_0002ENSMUSG00000031621ENSMUST00000034034ENSMUST00000174427ENSMUSG00000034518ENSMUST00000041759ENSMUST00000109940ENSMUST00000129391ENSMUST00000133585ENSMUST00000134126ENSMUST00000145919ENSMUST00000151062
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002NP_0001ENSG00000100281ENST00000216106ENST00000418170ENST00000420166ENST00000464480ENSG00000175329ENST00000308700ENST00000404699ENSG00000273068ENST00000610215ENSG00000279184ENST00000623959CIL_0002NP_0002ENSMUSG00000031621ENSMUST00000034034ENSMUST00000174427ENSMUSG00000034518ENSMUST00000041759ENSMUST00000109940ENSMUST00000145919
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100281 ENST00000216106 1.261±0.00 0.636±0.00 0.605±0.00 1.678±0.61 1.983±0.00 1.511±0.00 0.749±0.33 1.565±0.77 1.117±0.44 N/A 0.484±0.00 2.901±0.93 3.375±2.07 4.129±0.70
ENST00000418170 N/A 0.892±0.00 N/A N/A 0.636±0.00 0.871±0.00 N/A N/A N/A 0.180±0.00 1.291±0.00 1.512±0.80 N/A 2.380±0.05
ENST00000420166 N/A N/A 0.558±0.00 N/A N/A N/A N/A N/A 1.640±0.00 N/A 0.266±0.00 N/A N/A N/A
ENST00000455359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464480 N/A N/A N/A N/A N/A N/A N/A 4.880±0.00 N/A N/A N/A N/A N/A N/A
ENST00000466438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175329 ENST00000308700 N/A N/A N/A N/A N/A 2.404±0.57 N/A N/A N/A N/A N/A 1.238±0.66 N/A 0.055±0.00
ENST00000404699 N/A N/A 0.017±0.00 N/A 1.540±0.00 2.315±1.37 N/A N/A N/A N/A N/A 1.475±0.92 N/A 0.005±0.00
ENSG00000273068 ENST00000610215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A
ENSG00000279184 ENST00000623959 N/A N/A 0.168±0.00 0.089±0.00 0.190±0.00 0.084±0.00 0.114±0.04 N/A 0.138±0.06 N/A 0.027±0.01 0.136±0.11 0.423±0.58 1.253±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031621 ENSMUST00000034034 N/A N/A 0.004±0.00 0.016±0.00 N/A 43.615±15.99 0.089±0.00 N/A 0.031±0.02 0.027±0.01 N/A 0.121±0.06 0.193±0.12 N/A
ENSMUST00000174427 0.023±0.00 0.121±0.02 0.022±0.00 N/A N/A 15.576±0.71 0.033±0.01 N/A N/A 0.029±0.00 N/A 0.143±0.12 0.470±0.40 N/A
ENSMUSG00000034518 ENSMUST00000041759 N/A N/A 0.970±0.36 2.364±1.07 0.684±0.00 0.414±0.00 N/A 0.421±0.00 1.143±0.55 0.993±0.00 0.302±0.04 1.326±0.00 1.082±0.51 0.567±0.26
ENSMUST00000109940 2.550±0.61 5.083±1.21 1.285±0.13 2.168±0.83 3.126±1.34 3.647±0.52 1.215±0.48 2.252±0.65 1.070±0.43 4.185±1.39 0.280±0.00 8.255±2.24 2.232±1.45 0.705±0.19
ENSMUST00000129391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145919 2.624±1.05 1.823±0.50 3.889±0.33 4.983±2.82 1.839±0.45 1.750±0.28 0.934±0.12 1.464±0.30 2.482±1.76 2.528±0.55 1.129±0.27 4.452±1.57 3.753±1.16 0.664±0.34
ENSMUST00000151062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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