C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HMG box domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109940 Hmgxb4-003 ENSMUSG00000034518 10090 + 8:75016222-75031913 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109940
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109940 2.550±0.61 5.083±1.21 1.285±0.13 2.168±0.83 3.126±1.34 3.647±0.52 1.215±0.48 2.252±0.65 1.070±0.43 4.185±1.39 0.280±0.00 8.255±2.24 2.232±1.45 0.705±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NP CIL_0002NP_0002 CGP 8:74873173-75031978
CIL_0002NE CIL_0002NE_0002 CGP 8:74993356-75070121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216106 HMGXB4-002 protein_coding Homo_sapiens 0 1083
ENST00000418170 HMGXB4-001 nonsense_mediated_decay Homo_sapiens 0 1083
ENST00000498212 HMGXB4-008 retained_intron Homo_sapiens 0 433

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