C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HMG box domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041759 Hmgxb4-002 ENSMUSG00000034518 10090 + 8:74993356-75031972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041759
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041759 0.970±0.36 2.364±1.07 0.684±0.00 0.414±0.00 0.421±0.00 1.143±0.55 0.993±0.00 0.302±0.04 1.326±0.00 1.082±0.51 0.567±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NP CIL_0002NP_0002 CGP 8:74873173-75031978
CIL_0002NE CIL_0002NE_0002 CGP 8:74993356-75070121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016589 IEA NURF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216106 HMGXB4-002 protein_coding Homo_sapiens 0 1258
ENST00000418170 HMGXB4-001 nonsense_mediated_decay Homo_sapiens 0 1162
ENST00000420166 HMGXB4-004 protein_coding Homo_sapiens 0 1024
ENST00000455359 HMGXB4-003 protein_coding Homo_sapiens 0 296
ENST00000464480 HMGXB4-007 retained_intron Homo_sapiens 0 311
ENST00000498212 HMGXB4-008 retained_intron Homo_sapiens 0 433
ENST00000498325 HMGXB4-006 retained_intron Homo_sapiens 0 448

Loading