C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HMG box domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145919 Hmgxb4-001 ENSMUSG00000034518 10090 + 8:74993679-75031978 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000145919
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000145919 2.624±1.05 1.823±0.50 3.889±0.33 4.983±2.82 1.839±0.45 1.750±0.28 0.934±0.12 1.464±0.30 2.482±1.76 2.528±0.55 1.129±0.27 4.452±1.57 3.753±1.16 0.664±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NP CIL_0002NP_0002 CGP 8:74873173-75031978
CIL_0002NE CIL_0002NE_0002 CGP 8:74993356-75070121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216106 HMGXB4-002 protein_coding Homo_sapiens 0 1162
ENST00000418170 HMGXB4-001 nonsense_mediated_decay Homo_sapiens 0 1480
ENST00000420166 HMGXB4-004 protein_coding Homo_sapiens 0 296
ENST00000455359 HMGXB4-003 protein_coding Homo_sapiens 0 1225
ENST00000464480 HMGXB4-007 retained_intron Homo_sapiens 0 292
ENST00000498212 HMGXB4-008 retained_intron Homo_sapiens 0 433
ENST00000498325 HMGXB4-006 retained_intron Homo_sapiens 0 577

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