C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gap junction protein, gamma 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034520 Gjc1 10090 - 11:102799579-102819700 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068933 Gjc1-001 102799579-102819179 protein_coding
  ENSMUST00000092567 Gjc1-004 102799579-102819700 protein_coding
  ENSMUST00000107075 Gjc1-002 102799579-102804901 protein_coding
  ENSMUST00000131164 Gjc1-005 102801176-102819210 processed_transcript
  ENSMUST00000155089 Gjc1-003 102800731-102805788 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068933ENSMUST00000092567ENSMUST00000107075ENSMUST00000155089
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068933 6.385±1.47 1.814±0.95 9.014±0.18 8.320±5.54 2.244±1.43 2.504±0.45 5.598±2.13 1.425±0.82 0.599±0.30 4.857±1.28 1.103±0.43 3.695±1.24 2.178±0.73 2.474±1.15
ENSMUST00000092567 4.574±0.89 0.531±0.09 2.408±0.00 0.713±0.00 1.689±0.72 1.515±0.66 1.847±0.18 1.359±0.54 0.229±0.22 2.285±0.61 0.447±0.07 2.937±1.76 2.370±1.54 1.511±0.22
ENSMUST00000107075 2.314±0.00 0.771±0.39 N/A 3.231±0.74 0.560±0.19 0.714±0.10 N/A 0.350±0.00 0.242±0.10 1.344±0.32 0.229±0.00 1.858±0.98 N/A 0.921±0.05
ENSMUST00000155089 N/A 0.300±0.07 N/A N/A 0.371±0.00 N/A 0.683±0.00 0.290±0.00 0.055±0.02 1.116±0.13 N/A 0.962±0.20 0.658±0.08 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0003CR CIL_0003CR_0002 CGP 11:102761439-102819700
CIL_0006U4 CIL_0006U4_0002 CGP 11:102799579-102838040

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001570 IMP vasculogenesis
GO:0005216 IGI ion channel activity
GO:0005243 IEA gap junction channel activity
GO:0005515 IPI protein binding
GO:0005921 IDA gap junction
GO:0005922 IGI connexon complex
GO:0007267 IMP cell-cell signaling
GO:0007268 IMP synaptic transmission
GO:0007507 IMP heart development
GO:0007601 IMP visual perception
GO:0016021 IEA integral component of membrane
GO:0034220 IGI ion transmembrane transport
GO:0048468 IMP cell development
GO:0048738 IMP cardiac muscle tissue development
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077563 GJC1 gap junction protein, gamma 1, 45kDa protein_coding Danio_rerio
ENSG00000182963 GJC1 gap junction protein, gamma 1, 45kDa protein_coding Homo_sapiens

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