C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gap junction protein, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107075 Gjc1-002 ENSMUSG00000034520 10090 - 11:102799579-102804901 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENSMUST00000107075
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000107075 2.314±0.00 0.771±0.39 3.231±0.74 0.560±0.19 0.714±0.10 0.350±0.00 0.242±0.10 1.344±0.32 0.229±0.00 1.858±0.98 0.921±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0003CR CIL_0003CR_0002 CGP 11:102761439-102819700
CIL_0006U4 CIL_0006U4_0002 CGP 11:102799579-102838040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001570 IMP vasculogenesis
GO:0005216 IGI ion channel activity
GO:0005243 IEA gap junction channel activity
GO:0005515 IPI protein binding
GO:0005921 IDA gap junction
GO:0005922 IGI connexon complex
GO:0007267 IMP cell-cell signaling
GO:0007268 IMP synaptic transmission
GO:0007507 IMP heart development
GO:0007601 IMP visual perception
GO:0016021 IEA integral component of membrane
GO:0034220 IGI ion transmembrane transport
GO:0048468 IMP cell development
GO:0048738 IMP cardiac muscle tissue development
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330514 GJC1-003 protein_coding Homo_sapiens 0 2254
ENST00000426548 GJC1-201 protein_coding Homo_sapiens 0 2254
ENST00000586267 GJC1-005 protein_coding Homo_sapiens 0 346
ENST00000586347 GJC1-008 protein_coding Homo_sapiens 0 501
ENST00000587113 GJC1-009 protein_coding Homo_sapiens 0 1186
ENST00000587239 GJC1-007 protein_coding Homo_sapiens 0 357
ENST00000590758 GJC1-001 protein_coding Homo_sapiens 0 2226
ENST00000591424 GJC1-004 protein_coding Homo_sapiens 0 490
ENST00000592524 GJC1-002 protein_coding Homo_sapiens 0 2230

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