C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gap junction protein, gamma 1, 45kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182963 GJC1 9606 - 17:44798448-44830816 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330514 GJC1-003 44803034-44807884 protein_coding
  ENST00000426548 GJC1-201 44798448-44830811 protein_coding
  ENST00000586267 GJC1-005 44805608-44829694 protein_coding
  ENST00000586347 GJC1-008 44803949-44804966 protein_coding
  ENST00000587113 GJC1-009 44798448-44805409 protein_coding
  ENST00000587239 GJC1-007 44805600-44813305 protein_coding
  ENST00000590758 GJC1-001 44804217-44830813 protein_coding
  ENST00000591424 GJC1-004 44805507-44830816 protein_coding
  ENST00000592524 GJC1-002 44804247-44830231 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330514ENST00000426548ENST00000586267ENST00000586347ENST00000587113ENST00000590758ENST00000592524
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330514 N/A N/A N/A 0.573±0.00 N/A 1.625±0.00 N/A N/A N/A 0.818±0.00 N/A 0.353±0.00 N/A N/A
ENST00000426548 1.583±0.00 N/A N/A 0.338±0.00 N/A 1.139±0.00 0.586±0.00 N/A N/A N/A N/A 0.673±0.19 3.105±0.60 1.439±0.00
ENST00000586267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.881±0.00
ENST00000586347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.209±0.00 N/A N/A N/A
ENST00000587113 N/A 1.857±0.00 N/A N/A 1.872±0.00 3.985±0.00 1.794±0.00 0.241±0.12 N/A 1.910±0.00 N/A 0.677±0.15 2.303±0.46 2.220±0.00
ENST00000590758 N/A N/A 0.787±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592524 N/A N/A N/A N/A 1.800±0.00 N/A N/A N/A 4.089±0.00 0.720±0.00 N/A N/A N/A 3.257±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0003CR CIL_0003CR_0001 CGP 17:44759031-44830816
CIL_0006U4 CIL_0006U4_0001 CGP 17:44798448-44850480

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001570 IEA vasculogenesis
GO:0005216 IEA ion channel activity
GO:0005243 IEA gap junction channel activity
GO:0005515 IEA protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005886 TAS plasma membrane
GO:0005921 TAS gap junction
GO:0005922 IEA connexon complex
GO:0006810 NAS transport
GO:0006936 TAS muscle contraction
GO:0007043 TAS cell-cell junction assembly
GO:0007267 IEA cell-cell signaling
GO:0007268 TAS synaptic transmission
GO:0007507 IEA heart development
GO:0007601 IEA visual perception
GO:0014704 TAS intercalated disc
GO:0016021 IEA integral component of membrane
GO:0016264 TAS gap junction assembly
GO:0034220 IEA ion transmembrane transport
GO:0048468 IEA cell development
GO:0048738 IEA cardiac muscle tissue development
GO:0055085 IEA transmembrane transport
GO:0061024 TAS membrane organization
GO:0086014 TAS atrial cardiac muscle cell action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077563 GJC1 gap junction protein, gamma 1, 45kDa protein_coding Danio_rerio
ENSMUSG00000034520 Gjc1 gap junction protein, gamma 1 protein_coding Mus_musculus

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