C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arginine/serine-rich coiled-coil 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065074 Rsrc1-002 ENSMUSG00000034544 10090 + 3:66985672-67358395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065074
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065074 1.939±0.46 4.650±0.78 4.832±2.60 0.967±0.00 0.952±0.56 0.761±0.18 1.661±0.56 1.826±1.08 1.497±0.59 3.940±0.56 4.048±3.81 3.708±1.17 3.116±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SK CIL_0007SK_0002 VISTA 3:66400786-67001918
CIL_0008TK CIL_0008TK_0002 VISTA 3:66634735-67237240
CIL_0007KJ CIL_0007KJ_0002 UCNEbase 3:66683972-67341053
CIL_00098J CIL_00098J_0002 VISTA 3:66709377-67310623
CIL_0007SC CIL_0007SC_0002 VISTA 3:66736007-67337651
CIL_0008QV CIL_0008QV_0002 VISTA 3:66770295-67371594
CIL_0008BN CIL_0008BN_0002 VISTA 3:66846973-67447795
CIL_00086V CIL_00086V_0002 VISTA 3:66870618-67471970
CIL_0008BM CIL_0008BM_0002 VISTA 3:66890932-67492590
CIL_0008KO CIL_0008KO_0002 VISTA 3:66912683-67513884
CIL_0004JW CIL_0004JW_0003 CGP 3:66971727-67358396

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000380 IDA alternative mRNA splicing, via spliceosome
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006468 IDA protein phosphorylation
GO:0006913 IDA nucleocytoplasmic transport
GO:0008380 ISO RNA splicing
GO:0016607 IDA nuclear speck
GO:0046677 IDA response to antibiotic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295930 RSRC1-001 protein_coding Homo_sapiens 0 1195
ENST00000312179 RSRC1-004 protein_coding Homo_sapiens 0 667
ENST00000464171 RSRC1-002 protein_coding Homo_sapiens 0 667
ENST00000471911 RSRC1-005 processed_transcript Homo_sapiens 0 228
ENST00000471994 RSRC1-003 protein_coding Homo_sapiens 0 725
ENST00000475278 RSRC1-006 protein_coding Homo_sapiens 0 883
ENST00000476899 RSRC1-010 protein_coding Homo_sapiens 0 614
ENST00000477788 RSRC1-011 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000480119 RSRC1-013 nonsense_mediated_decay Homo_sapiens 0 665
ENST00000480820 RSRC1-007 protein_coding Homo_sapiens 0 1149
ENST00000482822 RSRC1-012 protein_coding Homo_sapiens 0 701
ENST00000496268 RSRC1-014 processed_transcript Homo_sapiens 2e-34 150
ENST00000611884 RSRC1-201 protein_coding Homo_sapiens 0 1218

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