C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | family with sequence similarity 175, member A | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000044535  |
Fam175a-003 |
ENSMUSG00000035234 |
10090 | - |
5:100805192-100820943  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000820 | CIL_000820_0002 | VISTA | 5:100731954-101333223 |
| CIL_0006J9 | CIL_0006J9_0002 | CGP | 5:100798627-100820965 |
| CIL_0006J8 | CIL_0006J8_0002 | CGP | 5:100805192-100899102 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005634 | ISS | nucleus |
| GO:0006302 | ISS | double-strand break repair |
| GO:0010212 | ISS | response to ionizing radiation |
| GO:0016568 | IEA | chromatin modification |
| GO:0031572 | ISS | G2 DNA damage checkpoint |
| GO:0031593 | ISS | polyubiquitin binding |
| GO:0045739 | ISS | positive regulation of DNA repair |
| GO:0070531 | ISS | BRCA1-A complex |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000321945
|
FAM175A-001 | protein_coding | Homo_sapiens | 0 | 654 |
|
ENST00000475656
|
FAM175A-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 248 |
|
ENST00000496877
|
RP11-301G23.1-001 | processed_pseudogene | Homo_sapiens | 0 | 414 |
|
ENST00000503217
|
FAM175A-006 | protein_coding | Homo_sapiens | 0 | 307 |
|
ENST00000505489
|
FAM175A-008 | protein_coding | Homo_sapiens | 0 | 564 |
|
ENST00000506553
|
FAM175A-009 | protein_coding | Homo_sapiens | 0 | 562 |
|
ENST00000511801
|
FAM175A-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 387 |
