C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 175, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117364 Fam175a-006 ENSMUSG00000035234 10090 - 5:100805192-100820940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117364
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117364 3.946±2.12 1.425±0.29 3.979±0.53 1.787±0.59 1.528±0.30 1.643±0.50 2.981±0.60 2.002±0.51 3.739±1.98 0.777±0.18 1.417±0.18 2.965±1.36 5.928±3.33 2.776±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000820 CIL_000820_0002 VISTA 5:100731954-101333223
CIL_0006J9 CIL_0006J9_0002 CGP 5:100798627-100820965
CIL_0006J8 CIL_0006J8_0002 CGP 5:100805192-100899102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0006302 ISS double-strand break repair
GO:0010212 ISS response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 ISS G2 DNA damage checkpoint
GO:0031593 ISS polyubiquitin binding
GO:0045739 ISS positive regulation of DNA repair
GO:0070531 ISS BRCA1-A complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321945 FAM175A-001 protein_coding Homo_sapiens 0 852
ENST00000475656 FAM175A-002 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000496877 RP11-301G23.1-001 processed_pseudogene Homo_sapiens 0 512
ENST00000503217 FAM175A-006 protein_coding Homo_sapiens 0 307
ENST00000505489 FAM175A-008 protein_coding Homo_sapiens 0 564
ENST00000506553 FAM175A-009 protein_coding Homo_sapiens 0 760
ENST00000511801 FAM175A-005 nonsense_mediated_decay Homo_sapiens 0 387

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