C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-54 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144030 Lin54-002 ENSMUSG00000035310 10090 - 5:100442200-100500639 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000144030
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000144030 1.470±0.42 0.736±0.09 1.511±0.47 0.609±0.00 0.591±0.06 0.643±0.17 0.654±0.00 0.978±0.25 1.056±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0003 CGP 5:100441918-100547803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340417 LIN54-001 protein_coding Homo_sapiens 0 2098
ENST00000442461 LIN54-006 protein_coding Homo_sapiens 0 2098
ENST00000446851 LIN54-004 protein_coding Homo_sapiens 0 2098
ENST00000505397 LIN54-003 protein_coding Homo_sapiens 0 1921
ENST00000506560 LIN54-008 protein_coding Homo_sapiens 0 2012
ENST00000508171 LIN54-007 nonsense_mediated_decay Homo_sapiens 0 1718
ENST00000510557 LIN54-002 protein_coding Homo_sapiens 0 2019
ENST00000510877 LIN54-005 nonsense_mediated_decay Homo_sapiens 0 2098

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