C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-54 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154921 Lin54-007 ENSMUSG00000035310 10090 - 5:100442033-100498633 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000154921
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000154921 0.622±0.00 0.701±0.03 0.708±0.09 1.148±0.00 0.303±0.01 1.202±0.55 1.129±0.32 1.027±0.00 0.227±0.00 1.082±0.53 2.548±1.77 1.667±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0003 CGP 5:100441918-100547803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340417 LIN54-001 protein_coding Homo_sapiens 0 2475
ENST00000442461 LIN54-006 protein_coding Homo_sapiens 0 2508
ENST00000446851 LIN54-004 protein_coding Homo_sapiens 0 2591
ENST00000505397 LIN54-003 protein_coding Homo_sapiens 0 2298
ENST00000506560 LIN54-008 protein_coding Homo_sapiens 0 2012
ENST00000508171 LIN54-007 nonsense_mediated_decay Homo_sapiens 0 1718
ENST00000510557 LIN54-002 protein_coding Homo_sapiens 0 2429
ENST00000510877 LIN54-005 nonsense_mediated_decay Homo_sapiens 0 2488

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