C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-54 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123572 Lin54-003 ENSMUSG00000035310 10090 - 5:100442042-100498578 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverMuscleOvaryENSMUST00000123572
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Muscle Ovary
ENSMUST00000123572 0.730±0.20 0.315±0.00 0.687±0.00 0.470±0.00 0.956±0.00 0.991±0.00 0.573±0.00 0.300±0.07 1.270±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0003 CGP 5:100441918-100547803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340417 LIN54-001 protein_coding Homo_sapiens 0 3964
ENST00000442461 LIN54-006 protein_coding Homo_sapiens 0 2475
ENST00000446851 LIN54-004 protein_coding Homo_sapiens 0 2475
ENST00000505397 LIN54-003 protein_coding Homo_sapiens 0 3461
ENST00000506560 LIN54-008 protein_coding Homo_sapiens 0 2012
ENST00000508171 LIN54-007 nonsense_mediated_decay Homo_sapiens 0 1718
ENST00000509748 LIN54-010 processed_transcript Homo_sapiens 0 976
ENST00000510557 LIN54-002 protein_coding Homo_sapiens 0 2396
ENST00000510877 LIN54-005 nonsense_mediated_decay Homo_sapiens 0 2455

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