C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHQ1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113312 Shq1-001 ENSMUSG00000035378 10090 - 6:100573081-100671157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113312 2.017±1.23 2.005±1.34 3.091±0.64 2.949±0.42 1.594±0.61 1.732±1.00 0.984±0.16 1.950±0.56 3.571±2.68 1.682±0.76 0.460±0.19 3.559±1.01 4.576±0.68 3.240±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T9 CIL_0001T9_0003 CGP 6:100228566-100671157
CIL_00059P CIL_00059P_0003 CGP 6:100573081-100805081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0022618 ISS ribonucleoprotein complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325599 SHQ1-001 protein_coding Homo_sapiens 0 1301
ENST00000437111 RP11-50E11.2-001 processed_pseudogene Homo_sapiens 0 907
ENST00000444040 SHQ1-003 nonsense_mediated_decay Homo_sapiens 0 1164
ENST00000463369 SHQ1-004 protein_coding Homo_sapiens 0 1158
ENST00000468371 SHQ1-002 processed_transcript Homo_sapiens 0 261
ENST00000471526 SHQ1-006 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000482785 SHQ1-005 protein_coding Homo_sapiens 0 496

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