C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHQ1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170667 Shq1-201 ENSMUSG00000035378 10090 - 6:100573082-100671157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170667
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170667 0.515±0.09 0.797±0.48 1.553±0.51 0.397±0.00 1.175±0.00 0.450±0.00 0.442±0.14 0.102±0.00 2.685±0.62 2.182±1.20 0.601±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T9 CIL_0001T9_0003 CGP 6:100228566-100671157
CIL_00059P CIL_00059P_0003 CGP 6:100573081-100805081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0022618 ISS ribonucleoprotein complex assembly
GO:0043065 IEA positive regulation of apoptotic process
GO:2000233 IEA negative regulation of rRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325599 SHQ1-001 protein_coding Homo_sapiens 0 1301
ENST00000437111 RP11-50E11.2-001 processed_pseudogene Homo_sapiens 0 907
ENST00000444040 SHQ1-003 nonsense_mediated_decay Homo_sapiens 0 1164
ENST00000463369 SHQ1-004 protein_coding Homo_sapiens 0 1158
ENST00000468371 SHQ1-002 processed_transcript Homo_sapiens 0 261
ENST00000471526 SHQ1-006 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000482785 SHQ1-005 protein_coding Homo_sapiens 0 496

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