C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP39 pre-mRNA processing factor 39 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129956 Prpf39-002 ENSMUSG00000035597 10090 + 12:65036366-65063386 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000129956
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000129956 1.723±0.00 2.508±0.31 2.825±0.01 2.118±0.51 1.289±0.06 1.171±0.00 1.461±0.03 3.754±1.38 2.700±0.58 0.635±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046Q CIL_00046Q_0002 CGP 12:64965742-65063386
CIL_0005HK CIL_0005HK_0003 CGP 12:65036333-65073944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355765 PRPF39-003 protein_coding Homo_sapiens 0 1105
ENST00000424478 PRPF39-001 nonsense_mediated_decay Homo_sapiens 0 1404
ENST00000477626 PRPF39-002 retained_intron Homo_sapiens 0 1105
ENST00000553605 PRPF39-009 protein_coding Homo_sapiens 0 309
ENST00000554081 PRPF39-007 nonsense_mediated_decay Homo_sapiens 0 1786
ENST00000554429 PRPF39-006 nonsense_mediated_decay Homo_sapiens 0 3494
ENST00000554439 PRPF39-004 nonsense_mediated_decay Homo_sapiens 0 2054
ENST00000554785 PRPF39-008 retained_intron Homo_sapiens 0 813
ENST00000556353 PRPF39-013 retained_intron Homo_sapiens 0 470
ENST00000556718 PRPF39-012 retained_intron Homo_sapiens 0 388
ENST00000556782 PRPF39-010 retained_intron Homo_sapiens 0 359
ENST00000557477 PRPF39-011 nonsense_mediated_decay Homo_sapiens 0 763

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