C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP39 pre-mRNA processing factor 39 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120580 Prpf39-001 ENSMUSG00000035597 10090 + 12:65036333-65063386 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120580
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120580 1.589±0.33 10.770±0.56 8.025±1.94 1.885±0.00 2.466±1.21 2.125±0.42 1.226±0.00 5.558±2.46 4.553±0.00 3.162±0.13 9.946±1.35 7.303±1.27 1.019±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046Q CIL_00046Q_0002 CGP 12:64965742-65063386
CIL_0005HK CIL_0005HK_0003 CGP 12:65036333-65073944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355765 PRPF39-003 protein_coding Homo_sapiens 0 2988
ENST00000424478 PRPF39-001 nonsense_mediated_decay Homo_sapiens 0 2438
ENST00000477626 PRPF39-002 retained_intron Homo_sapiens 0 2440
ENST00000553605 PRPF39-009 protein_coding Homo_sapiens 0 315
ENST00000554081 PRPF39-007 nonsense_mediated_decay Homo_sapiens 0 1339
ENST00000554429 PRPF39-006 nonsense_mediated_decay Homo_sapiens 0 1105
ENST00000554439 PRPF39-004 nonsense_mediated_decay Homo_sapiens 0 2438
ENST00000554785 PRPF39-008 retained_intron Homo_sapiens 0 1088
ENST00000556353 PRPF39-013 retained_intron Homo_sapiens 0 351
ENST00000556718 PRPF39-012 retained_intron Homo_sapiens 0 381
ENST00000556782 PRPF39-010 retained_intron Homo_sapiens 0 364
ENST00000557477 PRPF39-011 nonsense_mediated_decay Homo_sapiens 0 442

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