C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098098 Rnf38-004 ENSMUSG00000035696 10090 - 4:44126210-44167608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000098098
Transcript ID Adipose Adrenal Bladder Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000098098 2.451±0.00 4.805±0.00 4.717±0.00 5.754±1.39 1.154±0.00 2.356±0.13 2.487±0.99 0.748±0.05 1.688±0.00 3.669±1.07 27.981±13.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K4 CIL_0006K4_0002 CGP 4:44034075-44233789
CIL_0006K5 CIL_0006K5_0002 CGP 4:44126210-44364675

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0008584 IEA male gonad development
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0036126 IEA sperm flagellum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259605 RNF38-001 protein_coding Homo_sapiens 0 3314
ENST00000350199 RNF38-201 protein_coding Homo_sapiens 0 3314
ENST00000353739 RNF38-002 protein_coding Homo_sapiens 0 3314
ENST00000357058 RNF38-202 protein_coding Homo_sapiens 0 3314
ENST00000377877 RNF38-003 protein_coding Homo_sapiens 0 2032
ENST00000377885 RNF38-203 protein_coding Homo_sapiens 0 3314
ENST00000484621 RNF38-004 processed_transcript Homo_sapiens 0 671
ENST00000488058 RNF38-006 processed_transcript Homo_sapiens 0 226
ENST00000491349 RNF38-005 processed_transcript Homo_sapiens 0 1122
ENST00000611646 RNF38-204 protein_coding Homo_sapiens 0 2977

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