C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045793 Rnf38-017 ENSMUSG00000035696 10090 - 4:44126215-44168339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000045793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000045793 5.657±1.87 21.410±5.94 8.638±0.00 13.141±4.54 19.230±4.23 14.185±6.43 4.129±2.77 5.683±1.51 3.109±1.24 17.382±4.84 0.847±0.22 41.359±4.76 3.551±1.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K4 CIL_0006K4_0002 CGP 4:44034075-44233789
CIL_0006K5 CIL_0006K5_0002 CGP 4:44126210-44364675

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259605 RNF38-001 protein_coding Homo_sapiens 0 3574
ENST00000350199 RNF38-201 protein_coding Homo_sapiens 0 3315
ENST00000353739 RNF38-002 protein_coding Homo_sapiens 0 3314
ENST00000357058 RNF38-202 protein_coding Homo_sapiens 0 3574
ENST00000377877 RNF38-003 protein_coding Homo_sapiens 0 2032
ENST00000377885 RNF38-203 protein_coding Homo_sapiens 0 3589
ENST00000484621 RNF38-004 processed_transcript Homo_sapiens 0 671
ENST00000488058 RNF38-006 processed_transcript Homo_sapiens 0 486
ENST00000491349 RNF38-005 processed_transcript Homo_sapiens 0 1397
ENST00000611646 RNF38-204 protein_coding Homo_sapiens 0 2977

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