C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036989 Trim3 10090 - 7:105604463-105633571 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057525 Trim3-003 105610470-105633560 protein_coding
  ENSMUST00000106789 Trim3-001 105610648-105633537 protein_coding
  ENSMUST00000106791 Trim3-002 105604463-105633508 protein_coding
  ENSMUST00000140882 Trim3-004 105619106-105633571 processed_transcript
  ENSMUST00000147044 Trim3-005 105619383-105633485 protein_coding
  ENSMUST00000150363 Trim3-007 105617031-105618026 retained_intron
  ENSMUST00000153371 Trim3-006 105618784-105633525 protein_coding
  ENSMUST00000154218 Trim3-008 105612308-105613406 retained_intron
  ENSMUST00000156581 Trim3-009 105611139-105611856 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057525ENSMUST00000106789ENSMUST00000140882ENSMUST00000153371ENSMUST00000154218
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057525 6.222±1.98 5.878±1.13 3.323±0.00 3.492±0.54 5.288±0.80 3.507±1.72 3.309±0.84 6.041±0.77 1.037±0.41 17.674±2.13 N/A 6.078±1.55 0.990±0.13 0.785±0.08
ENSMUST00000106789 12.748±1.78 5.303±1.50 11.928±0.72 26.059±8.81 8.057±2.71 6.546±0.94 6.660±0.40 7.489±1.31 1.929±0.72 29.374±3.30 4.669±0.68 9.757±2.47 5.424±1.76 0.589±0.26
ENSMUST00000140882 14.659±0.00 12.200±1.45 N/A N/A 10.613±0.65 9.777±1.42 N/A 10.524±0.00 N/A 36.601±0.00 N/A 12.630±1.59 N/A N/A
ENSMUST00000153371 N/A 6.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154218 N/A N/A N/A 29.289±0.00 N/A N/A N/A N/A N/A N/A N/A 6.301±0.00 5.777±3.22 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A5 CIL_0004A5_0002 CGP 7:105591613-105633571
CIL_0004A8 CIL_0004A8_0002 CGP 7:105604463-105640416

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016567 IDA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005397 trim3b tripartite motif-containing 3b protein_coding Danio_rerio
ENSDARG00000063711 trim3a tripartite motif-containing 3a protein_coding Danio_rerio
ENSG00000110171 TRIM3 tripartite motif containing 3 protein_coding Homo_sapiens

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