C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057525 Trim3-003 ENSMUSG00000036989 10090 - 7:105610470-105633560 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000057525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000057525 6.222±1.98 5.878±1.13 3.323±0.00 3.492±0.54 5.288±0.80 3.507±1.72 3.309±0.84 6.041±0.77 1.037±0.41 17.674±2.13 6.078±1.55 0.990±0.13 0.785±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A5 CIL_0004A5_0002 CGP 7:105591613-105633571
CIL_0004A8 CIL_0004A8_0002 CGP 7:105604463-105640416

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016567 IDA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345851 TRIM3-001 protein_coding Homo_sapiens 0 3567
ENST00000359518 TRIM3-201 protein_coding Homo_sapiens 0 3454
ENST00000525074 TRIM3-002 protein_coding Homo_sapiens 0 3459
ENST00000526845 TRIM3-010 processed_transcript Homo_sapiens 2e-23 113
ENST00000528227 TRIM3-006 protein_coding Homo_sapiens 0 1101
ENST00000528932 TRIM3-007 processed_transcript Homo_sapiens 0 592
ENST00000529058 TRIM3-009 processed_transcript Homo_sapiens 0 800
ENST00000529529 TRIM3-005 protein_coding Homo_sapiens 0 418
ENST00000530724 TRIM3-012 processed_transcript Homo_sapiens 0 401
ENST00000532542 TRIM3-003 retained_intron Homo_sapiens 0 697
ENST00000533064 TRIM3-011 retained_intron Homo_sapiens 0 894
ENST00000533309 TRIM3-004 retained_intron Homo_sapiens 0 1506
ENST00000536344 TRIM3-202 protein_coding Homo_sapiens 0 3206

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