C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110171 TRIM3 9606 - 11:6448613-6474459 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000345851 TRIM3-001 6448615-6473984 protein_coding
  ENST00000359518 TRIM3-201 6448617-6473984 protein_coding
  ENST00000525074 TRIM3-002 6448614-6474459 protein_coding
  ENST00000526845 TRIM3-010 6451538-6456144 processed_transcript
  ENST00000527237 TRIM3-013 6456152-6456611 processed_transcript
  ENST00000528227 TRIM3-006 6456944-6473923 protein_coding
  ENST00000528932 TRIM3-007 6457404-6473893 processed_transcript
  ENST00000529058 TRIM3-009 6456126-6457733 processed_transcript
  ENST00000529529 TRIM3-005 6458138-6474394 protein_coding
  ENST00000530724 TRIM3-012 6450169-6451299 processed_transcript
  ENST00000532542 TRIM3-003 6448617-6453245 retained_intron
  ENST00000533064 TRIM3-011 6448613-6450391 retained_intron
  ENST00000533309 TRIM3-004 6448614-6451969 retained_intron
  ENST00000536344 TRIM3-202 6448617-6473984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345851ENST00000359518ENST00000525074ENST00000526845ENST00000527237ENST00000529058ENST00000529529ENST00000530724ENST00000532542ENST00000533064ENST00000533309ENST00000536344
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345851 2.205±0.00 3.045±0.00 3.893±2.39 1.816±0.89 4.244±0.00 1.495±1.43 3.471±0.00 0.780±0.39 2.562±1.99 N/A 5.059±1.57 3.097±1.04 3.628±0.00
ENST00000359518 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.248±0.00 N/A N/A N/A
ENST00000525074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.633±0.00
ENST00000526845 N/A N/A N/A N/A N/A 0.406±0.00 N/A N/A N/A N/A 1.831±0.00 N/A N/A
ENST00000527237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.944±0.00 N/A N/A
ENST00000529058 N/A N/A N/A N/A N/A N/A N/A 0.823±0.00 N/A N/A N/A N/A N/A
ENST00000529529 N/A N/A N/A N/A N/A 0.358±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000530724 N/A N/A N/A N/A N/A 0.366±0.00 N/A 0.831±0.00 N/A N/A N/A N/A N/A
ENST00000532542 N/A 0.361±0.00 0.465±0.00 N/A N/A N/A N/A 0.115±0.00 N/A N/A 0.560±0.00 N/A N/A
ENST00000533064 0.652±0.00 2.328±0.00 2.595±0.00 N/A 1.255±0.00 0.138±0.00 1.464±0.00 N/A 2.479±0.00 0.373±0.00 3.152±0.78 0.720±0.39 0.625±0.00
ENST00000533309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.757±0.00 N/A
ENST00000536344 0.985±0.00 N/A 1.761±0.00 N/A 0.689±0.00 N/A 1.293±0.00 0.532±0.00 N/A 1.424±1.23 2.506±0.00 0.780±0.00 1.182±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A5 CIL_0004A5_0001 CGP 11:6431049-6474459
CIL_0004A8 CIL_0004A8_0001 CGP 11:6448613-6481479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 TAS cytoplasm
GO:0005768 IEA endosome
GO:0007399 TAS nervous system development
GO:0008022 TAS protein C-terminus binding
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016567 IEA protein ubiquitination
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005397 trim3b tripartite motif-containing 3b protein_coding Danio_rerio
ENSDARG00000063711 trim3a tripartite motif-containing 3a protein_coding Danio_rerio
ENSMUSG00000036989 Trim3 tripartite motif-containing 3 protein_coding Mus_musculus

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