C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synovial sarcoma translocation, Chromosome 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092041 Ss18-203 ENSMUSG00000037013 10090 - 18:14625631-14682914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092041
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092041 22.079±5.86 37.063±2.33 19.791±1.76 12.045±6.79 19.614±10.87 18.159±4.77 6.034±1.06 17.128±4.66 12.534±2.93 33.403±5.00 1.655±0.81 54.031±17.07 15.727±3.12 5.389±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0002 UCNEbase 18:13186157-15176263
CIL_0008CS CIL_0008CS_0002 VISTA 18:14158160-14760150
CIL_0006ET CIL_0006ET_0002 CGP 18:14624198-14762299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0000902 IDA cell morphogenesis
GO:0005881 IDA cytoplasmic microtubule
GO:0007010 IDA cytoskeleton organization
GO:0035556 IDA intracellular signal transduction
GO:0042493 IDA response to drug
GO:0048013 IDA ephrin receptor signaling pathway
GO:0071564 IDA npBAF complex
GO:0097150 IMP neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269137 SS18-001 protein_coding Homo_sapiens 0 1903
ENST00000269138 SS18-007 nonsense_mediated_decay Homo_sapiens 0 922
ENST00000415083 SS18-003 protein_coding Homo_sapiens 0 1247
ENST00000539244 SS18-006 nonsense_mediated_decay Homo_sapiens 0 1048
ENST00000542420 SS18-002 protein_coding Homo_sapiens 0 1134
ENST00000577572 SS18-011 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000577636 SS18-026 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000577751 SS18-008 processed_transcript Homo_sapiens 0 217
ENST00000578595 SS18-021 processed_transcript Homo_sapiens 5e-17 92
ENST00000578700 SS18-010 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000578954 SS18-014 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000579061 SS18-024 protein_coding Homo_sapiens 0 645
ENST00000579640 SS18-004 nonsense_mediated_decay Homo_sapiens 0 1844
ENST00000580642 SS18-019 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000580751 SS18-018 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000580958 SS18-013 retained_intron Homo_sapiens 0 392
ENST00000581021 SS18-022 protein_coding Homo_sapiens 0 281
ENST00000581570 SS18-016 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000582448 SS18-009 nonsense_mediated_decay Homo_sapiens 3e-16 90
ENST00000582792 SS18-017 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000584083 SS18-023 protein_coding Homo_sapiens 0 547
ENST00000585121 SS18-005 nonsense_mediated_decay Homo_sapiens 0 1624
ENST00000585241 SS18-025 processed_transcript Homo_sapiens 0 601

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