C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synovial sarcoma translocation, Chromosome 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040924 Ss18-201 ENSMUSG00000037013 10090 - 18:14625631-14682914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040924
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040924 6.179±2.19 16.396±3.00 7.211±0.73 3.438±1.98 8.770±2.98 4.901±0.88 6.456±0.23 4.617±1.17 2.798±0.82 7.981±2.68 2.239±0.76 17.490±7.58 5.189±1.55 12.581±6.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0002 UCNEbase 18:13186157-15176263
CIL_0008CS CIL_0008CS_0002 VISTA 18:14158160-14760150
CIL_0006ET CIL_0006ET_0002 CGP 18:14624198-14762299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0000902 IDA cell morphogenesis
GO:0005515 IEA protein binding
GO:0005881 IDA cytoplasmic microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IDA cytoskeleton organization
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035556 IDA intracellular signal transduction
GO:0042493 IDA response to drug
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048013 IDA ephrin receptor signaling pathway
GO:0071564 IDA npBAF complex
GO:0097150 IMP neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269137 SS18-001 protein_coding Homo_sapiens 0 1266
ENST00000269138 SS18-007 nonsense_mediated_decay Homo_sapiens 0 1731
ENST00000415083 SS18-003 protein_coding Homo_sapiens 0 2351
ENST00000539244 SS18-006 nonsense_mediated_decay Homo_sapiens 0 1264
ENST00000542420 SS18-002 protein_coding Homo_sapiens 0 2237
ENST00000577572 SS18-011 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000577636 SS18-026 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000577751 SS18-008 processed_transcript Homo_sapiens 0 217
ENST00000578595 SS18-021 processed_transcript Homo_sapiens 5e-17 92
ENST00000578700 SS18-010 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000578954 SS18-014 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000579061 SS18-024 protein_coding Homo_sapiens 0 645
ENST00000579640 SS18-004 nonsense_mediated_decay Homo_sapiens 0 1048
ENST00000580642 SS18-019 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000580751 SS18-018 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000580958 SS18-013 retained_intron Homo_sapiens 0 390
ENST00000581021 SS18-022 protein_coding Homo_sapiens 0 281
ENST00000581570 SS18-016 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000582448 SS18-009 nonsense_mediated_decay Homo_sapiens 3e-16 90
ENST00000582792 SS18-017 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000584083 SS18-023 protein_coding Homo_sapiens 0 547
ENST00000585121 SS18-005 nonsense_mediated_decay Homo_sapiens 0 1048
ENST00000585241 SS18-025 processed_transcript Homo_sapiens 0 601

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