C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039827 Aff3-201 ENSMUSG00000037138 10090 - 1:38177327-38664955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000039827
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000039827 0.305±0.00 0.367±0.00 2.661±0.00 1.592±0.90 0.367±0.08 0.086±0.00 1.221±0.24 2.778±0.85 0.140±0.06 0.206±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N7 CIL_0007N7_0003 UCNEbase 1:38052781-38449781
CIL_000346 CIL_000346_0002 CGP 1:38052787-38664955
CIL_0004HL CIL_0004HL_0002 CGP 1:38177326-38836090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0006351 TAS transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317233 AFF3-201 protein_coding Homo_sapiens 0 2320
ENST00000409236 AFF3-001 protein_coding Homo_sapiens 0 2320
ENST00000409579 AFF3-002 protein_coding Homo_sapiens 0 2170
ENST00000415384 AFF3-009 protein_coding Homo_sapiens 3e-35 152
ENST00000416492 AFF3-005 protein_coding Homo_sapiens 0 435
ENST00000423966 AFF3-003 protein_coding Homo_sapiens 0 590
ENST00000424600 AFF3-006 protein_coding Homo_sapiens 0 483
ENST00000427118 AFF3-010 protein_coding Homo_sapiens 3e-35 152
ENST00000432037 AFF3-014 protein_coding Homo_sapiens 0 608
ENST00000440445 AFF3-008 protein_coding Homo_sapiens 0 207
ENST00000441400 AFF3-007 protein_coding Homo_sapiens 0 508
ENST00000445815 AFF3-015 protein_coding Homo_sapiens 0 547
ENST00000498090 AFF3-013 retained_intron Homo_sapiens 0 780

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