C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190029 Matr3-007 ENSMUSG00000037236 10090 + 18:35562453-35590464 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartMuscleOvaryPlacentaTestisENSMUST00000190029
Transcript ID Heart Muscle Ovary Placenta Testis
ENSMUST00000190029 4.078±1.20 5.975±1.74 21.979±5.03 16.330±3.14 90.409±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0002 CGP 18:35562146-35617186

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361059 MATR3-201 protein_coding Homo_sapiens 0 4237
ENST00000394800 MATR3-001 protein_coding Homo_sapiens 0 3631
ENST00000394805 MATR3-002 protein_coding Homo_sapiens 0 4242
ENST00000415279 RP11-90H3.1-001 processed_pseudogene Homo_sapiens 0 2521
ENST00000417774 RP1-172N19.3-001 processed_pseudogene Homo_sapiens 0 342
ENST00000433990 RP11-90H3.2-001 processed_pseudogene Homo_sapiens 0 656
ENST00000487828 RP11-262M14.2-001 processed_pseudogene Homo_sapiens 0 355
ENST00000502394 MATR3-026 protein_coding Homo_sapiens 0 795
ENST00000502422 MATR3-004 retained_intron Homo_sapiens 0 1554
ENST00000502499 MATR3-010 protein_coding Homo_sapiens 0 2235
ENST00000502929 MATR3-003 protein_coding Homo_sapiens 0 3631
ENST00000502944 MATR3-042 retained_intron Homo_sapiens 0 344
ENST00000503340 MATR3-044 protein_coding Homo_sapiens 0 736
ENST00000503811 MATR3-008 protein_coding Homo_sapiens 0 2353
ENST00000504023 MATR3-045 protein_coding Homo_sapiens 0 682
ENST00000504045 MATR3-011 protein_coding Homo_sapiens 0 2497
ENST00000504203 MATR3-012 protein_coding Homo_sapiens 0 2351
ENST00000504311 MATR3-029 protein_coding Homo_sapiens 0 560
ENST00000504643 MATR3-007 retained_intron Homo_sapiens 0 1533
ENST00000505016 MATR3-017 protein_coding Homo_sapiens 0 512
ENST00000505625 MATR3-005 retained_intron Homo_sapiens 0 2353
ENST00000506147 MATR3-018 protein_coding Homo_sapiens 0 292
ENST00000507860 MATR3-030 retained_intron Homo_sapiens 3e-25 119
ENST00000508689 MATR3-032 protein_coding Homo_sapiens 0 686
ENST00000509644 MATR3-025 protein_coding Homo_sapiens 0 534
ENST00000509918 MATR3-039 processed_transcript Homo_sapiens 0 366
ENST00000509990 MATR3-013 protein_coding Homo_sapiens 0 4233
ENST00000510056 MATR3-009 protein_coding Homo_sapiens 0 3919
ENST00000511249 MATR3-034 protein_coding Homo_sapiens 0 573
ENST00000511333 MATR3-040 retained_intron Homo_sapiens 0 322
ENST00000511378 MATR3-046 protein_coding Homo_sapiens 0 320
ENST00000511978 MATR3-037 processed_transcript Homo_sapiens 0 424
ENST00000512040 MATR3-041 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000512107 MATR3-019 protein_coding Homo_sapiens 4e-20 102
ENST00000512876 MATR3-028 protein_coding Homo_sapiens 0 728
ENST00000513121 MATR3-031 retained_intron Homo_sapiens 3e-26 122
ENST00000513678 MATR3-035 protein_coding Homo_sapiens 0 379
ENST00000514402 MATR3-038 retained_intron Homo_sapiens 0 272
ENST00000514488 MATR3-043 protein_coding Homo_sapiens 0 800
ENST00000514528 MATR3-033 protein_coding Homo_sapiens 0 625
ENST00000514694 MATR3-024 protein_coding Homo_sapiens 0 835
ENST00000515833 MATR3-036 protein_coding Homo_sapiens 0 1033
ENST00000618441 MATR3-202 protein_coding Homo_sapiens 0 4242
ENST00000620916 MATR3-203 protein_coding Homo_sapiens 0 612

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