C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190121 Matr3-002 ENSMUSG00000037236 10090 + 18:35562211-35591419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000190121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000190121 7.838±3.45 4.794±0.00 41.003±4.22 70.213±26.85 9.731±2.35 3.785±0.42 4.382±0.55 7.033±1.51 14.517±12.83 7.448±0.74 7.894±2.68 35.909±12.64 22.213±7.50 15.409±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0002 CGP 18:35562146-35617186

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361059 MATR3-201 protein_coding Homo_sapiens 0 3398
ENST00000394800 MATR3-001 protein_coding Homo_sapiens 0 1775
ENST00000394805 MATR3-002 protein_coding Homo_sapiens 0 3398
ENST00000415279 RP11-90H3.1-001 processed_pseudogene Homo_sapiens 0 1077
ENST00000417774 RP1-172N19.3-001 processed_pseudogene Homo_sapiens 0 342
ENST00000433990 RP11-90H3.2-001 processed_pseudogene Homo_sapiens 0 656
ENST00000487828 RP11-262M14.2-001 processed_pseudogene Homo_sapiens 0 355
ENST00000502422 MATR3-004 retained_intron Homo_sapiens 0 1554
ENST00000502499 MATR3-010 protein_coding Homo_sapiens 0 3518
ENST00000502929 MATR3-003 protein_coding Homo_sapiens 0 1775
ENST00000502944 MATR3-042 retained_intron Homo_sapiens 0 344
ENST00000503811 MATR3-008 protein_coding Homo_sapiens 0 2850
ENST00000504045 MATR3-011 protein_coding Homo_sapiens 0 492
ENST00000504203 MATR3-012 protein_coding Homo_sapiens 0 2567
ENST00000504311 MATR3-029 protein_coding Homo_sapiens 0 564
ENST00000504643 MATR3-007 retained_intron Homo_sapiens 0 1533
ENST00000505625 MATR3-005 retained_intron Homo_sapiens 0 3398
ENST00000506147 MATR3-018 protein_coding Homo_sapiens 6.99949e-42 174
ENST00000509644 MATR3-025 protein_coding Homo_sapiens 0 418
ENST00000509918 MATR3-039 processed_transcript Homo_sapiens 0 244
ENST00000509990 MATR3-013 protein_coding Homo_sapiens 0 2231
ENST00000510056 MATR3-009 protein_coding Homo_sapiens 0 1912
ENST00000511249 MATR3-034 protein_coding Homo_sapiens 0 573
ENST00000511333 MATR3-040 retained_intron Homo_sapiens 0 322
ENST00000511978 MATR3-037 processed_transcript Homo_sapiens 0 424
ENST00000512040 MATR3-041 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000512107 MATR3-019 protein_coding Homo_sapiens 4e-20 102
ENST00000512876 MATR3-028 protein_coding Homo_sapiens 0 610
ENST00000513678 MATR3-035 protein_coding Homo_sapiens 0 401
ENST00000514528 MATR3-033 protein_coding Homo_sapiens 0 507
ENST00000515833 MATR3-036 protein_coding Homo_sapiens 0 1033
ENST00000618441 MATR3-202 protein_coding Homo_sapiens 0 3398
ENST00000620916 MATR3-203 protein_coding Homo_sapiens 0 1775

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