C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L10A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128758 Rpl10a-006 ENSMUSG00000037805 10090 + 17:28328583-28329638 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverOvaryTestisENSMUST00000128758
Transcript ID Adipose Adrenal Breast Colon Liver Ovary Testis
ENSMUST00000128758 112.717±4.93 56.665±6.47 78.595±12.73 80.608±11.73 65.273±67.55 119.012±7.54 19.427±1.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002L9 CIL_0002L9_0003 CGP 17:28313530-28331032
CIL_0002EP CIL_0002EP_0002 CGP 17:28328471-28350805

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000138427 rpl10a-004 nonsense_mediated_decay Danio_rerio 3e-22 110
ENSDART00000141110 rpl10a-003 retained_intron Danio_rerio 3e-22 110
ENSDART00000136547 rpl10a-002 processed_transcript Danio_rerio 4e-21 106
ENSDART00000062983 rpl10a-001 protein_coding Danio_rerio 4e-21 106
ENST00000322203 RPL10A-001 protein_coding Homo_sapiens 0 261
ENST00000426688 RP3-445O10.1-001 processed_pseudogene Homo_sapiens 6e-38 161
ENST00000464112 RPL10A-002 processed_transcript Homo_sapiens 0 244
ENST00000467020 RPL10A-005 processed_transcript Homo_sapiens 0 545
ENST00000472730 RPL10AP6-001 processed_pseudogene Homo_sapiens 0 224
ENST00000478340 RPL10A-004 processed_transcript Homo_sapiens 0 433
ENST00000490335 RPL10A-003 processed_transcript Homo_sapiens 1.99965e-42 176

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