C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L10A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042334 Rpl10a-001 ENSMUSG00000037805 10090 + 17:28328471-28331032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042334
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042334 369.048±154.74 452.013±80.64 808.825±24.54 329.483±191.89 429.714±160.75 680.134±159.55 155.578±54.77 484.023±65.03 609.796±412.72 349.341±53.86 144.458±10.93 850.158±514.25 455.056±319.24 97.455±44.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002L9 CIL_0002L9_0003 CGP 17:28313530-28331032
CIL_0002EP CIL_0002EP_0002 CGP 17:28328471-28350805

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000136547 rpl10a-002 processed_transcript Danio_rerio 0 577
ENSDART00000062983 rpl10a-001 protein_coding Danio_rerio 0 577
ENSDART00000138427 rpl10a-004 nonsense_mediated_decay Danio_rerio 4e-21 106
ENSDART00000141110 rpl10a-003 retained_intron Danio_rerio 4e-21 106
ENST00000322203 RPL10A-001 protein_coding Homo_sapiens 0 824
ENST00000392713 RP1-228H13.2-001 processed_pseudogene Homo_sapiens 0 348
ENST00000426688 RP3-445O10.1-001 processed_pseudogene Homo_sapiens 0 660
ENST00000464112 RPL10A-002 processed_transcript Homo_sapiens 0 808
ENST00000467020 RPL10A-005 processed_transcript Homo_sapiens 0 571
ENST00000472730 RPL10AP6-001 processed_pseudogene Homo_sapiens 0 756
ENST00000478340 RPL10A-004 processed_transcript Homo_sapiens 0 568
ENST00000479243 RPL10AP2-001 processed_pseudogene Homo_sapiens 0 736
ENST00000486625 CTD-2161E19.1-001 processed_pseudogene Homo_sapiens 0 682
ENST00000490335 RPL10A-003 processed_transcript Homo_sapiens 0 544

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