C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre B cell leukemia homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113132 Pbx3-002 ENSMUSG00000038718 10090 - 2:34171457-34372038 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113132
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113132 0.784±0.50 17.744±0.00 1.727±0.52 22.387±16.78 0.215±0.00 3.087±0.00 0.652±0.10 1.274±0.49 1.364±1.26 1.653±0.80 0.358±0.13 2.953±0.98 0.854±0.43 0.583±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X9 CIL_0007X9_0002 VISTA 2:33575330-34178839
CIL_00095V CIL_00095V_0002 VISTA 2:33716020-34317341
CIL_0007YU CIL_0007YU_0002 VISTA 2:33733022-34333763
CIL_0007LN CIL_0007LN_0002 UCNEbase 2:33746984-34647960
CIL_0008R2 CIL_0008R2_0002 VISTA 2:33764832-34366528
CIL_000960 CIL_000960_0002 VISTA 2:33866778-34467772
CIL_000849 CIL_000849_0002 VISTA 2:33929436-34530577
CIL_0007QH CIL_0007QH_0002 VISTA 2:33935168-34536289
CIL_0007YW CIL_0007YW_0002 VISTA 2:33955333-34557138
CIL_00086D CIL_00086D_0002 VISTA 2:33960195-34561369
CIL_0008I6 CIL_0008I6_0002 VISTA 2:33986508-34588340
CIL_000848 CIL_000848_0002 VISTA 2:34010581-34611103
CIL_0008R5 CIL_0008R5_0002 VISTA 2:34054690-34656547
CIL_000961 CIL_000961_0002 VISTA 2:34056455-34659025
CIL_0008GT CIL_0008GT_0002 VISTA 2:34059231-34660874
CIL_0008Q0 CIL_0008Q0_0002 VISTA 2:34063448-34664810
CIL_0008LX CIL_0008LX_0002 VISTA 2:34155217-34756803
CIL_00080V CIL_00080V_0002 VISTA 2:34162107-34763282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002087 IMP regulation of respiratory gaseous exchange by neurological system process
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007585 IMP respiratory gaseous exchange
GO:0008344 IMP adult locomotory behavior
GO:0021516 IMP dorsal spinal cord development
GO:0043565 IDA sequence-specific DNA binding
GO:0048666 IMP neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342287 PBX3-001 protein_coding Homo_sapiens 0 3358
ENST00000373482 PBX3-010 nonsense_mediated_decay Homo_sapiens 0 741
ENST00000373487 PBX3-007 protein_coding Homo_sapiens 0 1587
ENST00000373489 PBX3-006 protein_coding Homo_sapiens 0 1659
ENST00000373492 PBX3-005 nonsense_mediated_decay Homo_sapiens 0 1031
ENST00000428092 PBX3-008 protein_coding Homo_sapiens 0 830
ENST00000447726 PBX3-002 protein_coding Homo_sapiens 0 1587
ENST00000491160 PBX3-014 processed_transcript Homo_sapiens 0 333
ENST00000491787 PBX3-009 protein_coding Homo_sapiens 0 848
ENST00000497091 PBX3-003 processed_transcript Homo_sapiens 0 564
ENST00000538998 PBX3-013 processed_transcript Homo_sapiens 0 1465

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