C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM14 homolog B (SCD6, S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039108 Lsm14b 10090 + 2:180024987-180035465 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055485 Lsm14b-001 180024987-180035461 protein_coding
  ENSMUST00000058764 Lsm14b-002 180026398-180035465 protein_coding
  ENSMUST00000140257 Lsm14b-003 180027909-180033810 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055485ENSMUST00000058764ENSMUST00000140257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055485 9.635±2.04 9.131±4.68 14.961±0.40 21.909±4.09 6.871±0.87 11.398±2.54 2.775±0.13 9.975±1.17 6.302±1.77 8.522±0.57 3.290±2.45 18.893±7.50 6.017±0.28 10.610±4.71
ENSMUST00000058764 6.354±0.00 6.457±0.58 4.900±0.24 24.577±18.18 3.574±0.87 N/A N/A 2.011±0.27 1.821±0.35 3.494±0.71 6.014±0.00 7.724±2.31 2.429±1.14 3.786±1.18
ENSMUST00000140257 N/A N/A N/A 36.460±0.00 N/A N/A N/A N/A N/A N/A N/A 81.627±0.00 21.243±5.85 59.905±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DN CIL_0001DN_0002 CGP 2:179912146-180035465
CIL_0001DO CIL_0001DO_0002 CGP 2:180024987-180042433

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0006417 IEA regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025386 lsm14b LSM14B, SCD6 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSG00000149657 LSM14B LSM14B, SCD6 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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