C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM14 homolog B (SCD6, S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055485 Lsm14b-001 ENSMUSG00000039108 10090 + 2:180024987-180035461 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055485
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055485 9.635±2.04 9.131±4.68 14.961±0.40 21.909±4.09 6.871±0.87 11.398±2.54 2.775±0.13 9.975±1.17 6.302±1.77 8.522±0.57 3.290±2.45 18.893±7.50 6.017±0.28 10.610±4.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DN CIL_0001DN_0002 CGP 2:179912146-180035465
CIL_0001DO CIL_0001DO_0002 CGP 2:180024987-180042433

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0006417 IEA regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000279068 LSM14B-001 protein_coding Homo_sapiens 0 1844
ENST00000279069 LSM14B-002 protein_coding Homo_sapiens 0 889
ENST00000361670 LSM14B-006 protein_coding Homo_sapiens 0 658
ENST00000370915 LSM14B-005 protein_coding Homo_sapiens 0 741
ENST00000400318 LSM14B-003 protein_coding Homo_sapiens 0 645
ENST00000433627 LSM14A-003 protein_coding Homo_sapiens 0 209
ENST00000540746 LSM14A-002 protein_coding Homo_sapiens 0 209
ENST00000544216 LSM14A-001 protein_coding Homo_sapiens 0 209
ENST00000570462 LSM14A-002 protein_coding Homo_sapiens 0 209
ENST00000575110 LSM14A-004 nonsense_mediated_decay Homo_sapiens 0 195
ENST00000575697 LSM14A-005 protein_coding Homo_sapiens 0 204
ENST00000575811 LSM14A-001 protein_coding Homo_sapiens 0 209
ENST00000586157 LSM14A-004 protein_coding Homo_sapiens 0 204
ENST00000589878 LSM14A-006 nonsense_mediated_decay Homo_sapiens 0 195

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