C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, C3HC type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080812 Zc3hc1-002 ENSMUSG00000039130 10090 - 6:30366380-30391023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080812
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080812 6.824±0.75 3.205±0.98 6.421±0.68 14.967±2.14 4.457±1.21 2.288±0.61 5.234±0.48 4.371±0.66 7.143±4.41 4.882±0.61 6.993±0.46 7.388±3.31 8.105±4.79 6.700±2.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DZ CIL_0004DZ_0002 CGP 6:30211289-30391028
CIL_0008PP CIL_0008PP_0002 VISTA 6:30335908-30937352
CIL_0004E3 CIL_0004E3_0002 CGP 6:30366380-30455179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007067 IEA mitotic nuclear division
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:2001240 IDA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311873 ZC3HC1-201 protein_coding Homo_sapiens 0 1382
ENST00000358303 ZC3HC1-001 protein_coding Homo_sapiens 0 1498
ENST00000360708 ZC3HC1-002 protein_coding Homo_sapiens 0 981
ENST00000467642 ZC3HC1-003 nonsense_mediated_decay Homo_sapiens 0 1382
ENST00000471022 ZC3HC1-009 retained_intron Homo_sapiens 0 630
ENST00000477578 ZC3HC1-005 retained_intron Homo_sapiens 0 736
ENST00000481503 ZC3HC1-004 protein_coding Homo_sapiens 0 754
ENST00000483827 ZC3HC1-006 nonsense_mediated_decay Homo_sapiens 3.00018e-42 176

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