C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, C3HC type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138983 Zc3hc1-009 ENSMUSG00000039130 10090 - 6:30370268-30372980 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryENSMUST00000138983
Transcript ID Adrenal Breast Colon Lung Ovary
ENSMUST00000138983 4.577±1.05 4.376±0.81 2.549±0.00 4.664±0.00 7.013±2.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DZ CIL_0004DZ_0002 CGP 6:30211289-30391028
CIL_0008PP CIL_0008PP_0002 VISTA 6:30335908-30937352
CIL_0004E3 CIL_0004E3_0002 CGP 6:30366380-30455179

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311873 ZC3HC1-201 protein_coding Homo_sapiens 0 433
ENST00000358303 ZC3HC1-001 protein_coding Homo_sapiens 0 433
ENST00000360708 ZC3HC1-002 protein_coding Homo_sapiens 0 222
ENST00000467642 ZC3HC1-003 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000477578 ZC3HC1-005 retained_intron Homo_sapiens 1e-35 154
ENST00000481503 ZC3HC1-004 protein_coding Homo_sapiens 0 433

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