C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, C3HC type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152391 Zc3hc1-004 ENSMUSG00000039130 10090 - 6:30366384-30391002 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaENSMUST00000152391
Transcript ID Brain Colon Ovary Placenta
ENSMUST00000152391 5.166±0.00 0.560±0.00 2.765±0.00 3.033±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DZ CIL_0004DZ_0002 CGP 6:30211289-30391028
CIL_0008PP CIL_0008PP_0002 VISTA 6:30335908-30937352
CIL_0004E3 CIL_0004E3_0002 CGP 6:30366380-30455179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:2001240 IDA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311873 ZC3HC1-201 protein_coding Homo_sapiens 0 638
ENST00000358303 ZC3HC1-001 protein_coding Homo_sapiens 0 737
ENST00000360708 ZC3HC1-002 protein_coding Homo_sapiens 0 737
ENST00000467642 ZC3HC1-003 nonsense_mediated_decay Homo_sapiens 0 638
ENST00000471022 ZC3HC1-009 retained_intron Homo_sapiens 0 359
ENST00000477578 ZC3HC1-005 retained_intron Homo_sapiens 0 359
ENST00000481503 ZC3HC1-004 protein_coding Homo_sapiens 0 1347
ENST00000483827 ZC3HC1-006 nonsense_mediated_decay Homo_sapiens 3.00018e-42 176

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