C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rhomboid domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039917 Rhbdd2 10090 + 5:135632618-135646448 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043707 Rhbdd2-001 135632618-135646376 protein_coding
  ENSMUST00000084599 Rhbdd2-003 135636532-135644527 retained_intron
  ENSMUST00000129134 Rhbdd2-005 135632723-135636545 processed_transcript
  ENSMUST00000130647 Rhbdd2-006 135632704-135637618 processed_transcript
  ENSMUST00000136748 Rhbdd2-002 135632654-135646448 nonsense_mediated_decay
  ENSMUST00000144633 Rhbdd2-004 135632716-135635615 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043707ENSMUST00000084599ENSMUST00000129134ENSMUST00000136748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043707 5.529±1.58 27.517±2.84 4.669±0.07 3.166±1.07 9.808±3.72 6.656±1.26 3.461±1.09 11.821±2.27 2.978±1.10 10.043±1.51 1.127±0.14 13.918±6.48 3.352±1.22 5.322±3.22
ENSMUST00000084599 1.897±0.28 N/A 2.862±0.15 1.630±0.75 2.658±0.27 1.767±0.36 0.708±0.09 1.826±0.21 0.876±0.16 1.988±0.33 0.240±0.07 2.682±0.96 1.950±0.52 1.257±0.57
ENSMUST00000129134 6.163±0.00 25.425±2.25 N/A N/A N/A 4.867±0.50 N/A N/A 2.558±0.49 7.957±0.10 1.787±0.00 11.542±1.95 5.582±1.28 12.570±1.42
ENSMUST00000136748 1.634±0.00 N/A N/A 2.082±0.43 1.604±0.00 N/A N/A N/A N/A N/A N/A 1.458±0.00 N/A 5.482±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NQ CIL_0006NQ_0002 CGP 5:135569937-135646448
CIL_0006NP CIL_0006NP_0002 CGP 5:135632618-135735326

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0003674 ND molecular_function
GO:0004252 IEA serine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092463 rhbdd2 rhomboid domain containing 2 protein_coding Danio_rerio
ENSG00000005486 RHBDD2 rhomboid domain containing 2 protein_coding Homo_sapiens

Loading