C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rhomboid domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000005486 RHBDD2 9606 + 7:75842602-75888926 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000006777 RHBDD2-001 75878948-75888921 protein_coding
  ENST00000318622 RHBDD2-201 75878999-75888926 protein_coding
  ENST00000428119 RHBDD2-002 75882044-75888921 protein_coding
  ENST00000454791 RHBDD2-006 75879004-75888884 nonsense_mediated_decay
  ENST00000466232 RHBDD2-003 75842602-75882124 processed_transcript
  ENST00000467406 RHBDD2-009 75883490-75888268 processed_transcript
  ENST00000468304 RHBDD2-005 75879172-75888583 processed_transcript
  ENST00000468644 RHBDD2-004 75878091-75882165 processed_transcript
  ENST00000476218 RHBDD2-008 75879140-75880305 processed_transcript
  ENST00000613112 RHBDD2-202 75878948-75888926 protein_coding
  ENST00000614848 RHBDD2-203 75878948-75888920 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000006777ENST00000318622ENST00000428119ENST00000454791ENST00000466232ENST00000467406ENST00000468644ENST00000613112ENST00000614848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000006777 N/A N/A N/A 9.813±0.00 N/A N/A 0.109±0.00 0.148±0.00 N/A 0.535±0.00 N/A 13.713±4.31 6.348±0.00 N/A
ENST00000318622 N/A 6.084±0.00 N/A N/A 1.215±0.00 N/A N/A N/A 0.867±0.00 1.401±0.00 N/A 28.098±0.00 N/A 11.106±0.05
ENST00000428119 17.384±0.00 29.607±0.00 N/A 49.491±0.00 18.653±0.00 8.283±0.00 3.198±0.00 7.658±6.80 19.154±0.00 25.120±0.00 13.932±0.00 28.287±4.27 19.205±1.15 28.081±5.73
ENST00000454791 7.305±0.00 N/A 0.355±0.00 N/A 6.078±0.00 2.747±0.00 2.462±0.00 15.255±0.00 6.795±0.00 11.581±0.00 N/A 10.262±0.00 7.505±0.60 15.777±5.75
ENST00000466232 N/A N/A 0.311±0.00 N/A N/A 0.293±0.00 0.212±0.00 N/A N/A 1.332±0.00 1.350±0.00 N/A N/A N/A
ENST00000467406 N/A N/A N/A N/A N/A N/A 0.716±0.00 N/A N/A N/A 3.231±0.00 2.138±0.00 N/A N/A
ENST00000468644 N/A N/A N/A N/A N/A 0.752±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613112 N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000614848 14.327±0.00 12.979±0.00 N/A 65.801±0.00 13.772±0.00 10.019±0.00 2.825±2.71 14.652±14.50 23.122±0.00 16.923±16.36 15.838±0.00 18.589±8.02 20.658±2.01 8.241±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NQ CIL_0006NQ_0001 CGP 7:75811665-75888926
CIL_0006NP CIL_0006NP_0001 CGP 7:75842602-75986855

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0004252 IEA serine-type endopeptidase activity
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006508 IEA proteolysis
GO:0016021 IEA integral component of membrane
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092463 rhbdd2 rhomboid domain containing 2 protein_coding Danio_rerio
ENSMUSG00000039917 Rhbdd2 rhomboid domain containing 2 protein_coding Mus_musculus

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