C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043707 Rhbdd2-001 ENSMUSG00000039917 10090 + 5:135632618-135646376 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043707
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043707 5.529±1.58 27.517±2.84 4.669±0.07 3.166±1.07 9.808±3.72 6.656±1.26 3.461±1.09 11.821±2.27 2.978±1.10 10.043±1.51 1.127±0.14 13.918±6.48 3.352±1.22 5.322±3.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NQ CIL_0006NQ_0002 CGP 5:135569937-135646448
CIL_0006NP CIL_0006NP_0002 CGP 5:135632618-135735326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0003674 ND molecular_function
GO:0004252 IEA serine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000006777 RHBDD2-001 protein_coding Homo_sapiens 0 1147
ENST00000318622 RHBDD2-201 protein_coding Homo_sapiens 0 931
ENST00000428119 RHBDD2-002 protein_coding Homo_sapiens 0 652
ENST00000454791 RHBDD2-006 nonsense_mediated_decay Homo_sapiens 0 931
ENST00000467406 RHBDD2-009 processed_transcript Homo_sapiens 0 399
ENST00000468304 RHBDD2-005 processed_transcript Homo_sapiens 0 315
ENST00000613112 RHBDD2-202 protein_coding Homo_sapiens 0 1133
ENST00000614848 RHBDD2-203 protein_coding Homo_sapiens 0 1133

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