C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rab geranylgeranyl transferase, a subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163889 Rabggta-202 ENSMUSG00000040472 10090 - 14:55716325-55722257 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163889 9.444±1.40 13.404±1.49 5.484±0.62 9.341±3.26 8.925±2.42 12.197±1.95 6.568±1.65 18.585±5.37 12.973±6.29 10.456±0.79 2.728±0.49 12.532±5.74 12.054±5.67 9.515±4.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SH CIL_0001SH_0002 CGP 14:55700009-55722257
CIL_0002LB CIL_0002LB_0002 CGP 14:55715873-55745690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004663 IMP Rab geranylgeranyltransferase activity
GO:0005968 ISS Rab-protein geranylgeranyltransferase complex
GO:0008270 IEA zinc ion binding
GO:0017137 ISS Rab GTPase binding
GO:0018344 IMP protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216840 RABGGTA-002 protein_coding Homo_sapiens 0 1964
ENST00000399409 RABGGTA-003 protein_coding Homo_sapiens 0 1949
ENST00000543002 RABGGTA-006 retained_intron Homo_sapiens 0 1044
ENST00000558376 RABGGTA-001 nonsense_mediated_decay Homo_sapiens 0 1940
ENST00000558534 RABGGTA-016 processed_transcript Homo_sapiens 0 553
ENST00000558649 RABGGTA-013 retained_intron Homo_sapiens 0 484
ENST00000558936 RABGGTA-018 retained_intron Homo_sapiens 0 593
ENST00000558954 RABGGTA-020 processed_transcript Homo_sapiens 0 549
ENST00000559551 RABGGTA-007 retained_intron Homo_sapiens 0 1905
ENST00000559586 RABGGTA-017 processed_transcript Homo_sapiens 0 737
ENST00000559850 RABGGTA-014 retained_intron Homo_sapiens 0 335
ENST00000559974 RABGGTA-008 nonsense_mediated_decay Homo_sapiens 0 1929
ENST00000560127 RABGGTA-019 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000560163 RABGGTA-021 processed_transcript Homo_sapiens 0 505
ENST00000560207 RABGGTA-022 retained_intron Homo_sapiens 0 283
ENST00000560243 RABGGTA-010 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000560521 RABGGTA-009 protein_coding Homo_sapiens 0 649
ENST00000560777 RABGGTA-012 protein_coding Homo_sapiens 0 725
ENST00000560871 RABGGTA-015 processed_transcript Homo_sapiens 0 586
ENST00000560998 RABGGTA-005 retained_intron Homo_sapiens 0 1225
ENST00000561055 RABGGTA-011 retained_intron Homo_sapiens 0 274

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